View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_70 (Length: 401)
Name: NF1139_high_70
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 17108695 - 17108333
Alignment:
| Q |
30 |
gttatgaagtaaatcgtctctattgttgaaagagaataacttgtactgcaagttgacgagtaatttagctcgaaaatcgatgtgactcatccatggatca |
129 |
Q |
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| T |
17108695 |
gttatgaagtaaatcgtctctattgttgaaagagaataacttatactgcaagttaatgagtaacttagctcgataatcgacgtgactcatccatggatca |
17108596 |
T |
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| Q |
130 |
acgataaagaaaaacccaggcttgtgcaaatagcataaccttttgaaagctaatttagatggggaattggaaatatcgcttatattccaatatatataat |
229 |
Q |
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| T |
17108595 |
acaataaagaaaaacccaggcttgtgcaaataacataaccttttgaaagctgatttagatggggaattggaaatatcgcttataatccaata--tataat |
17108498 |
T |
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| Q |
230 |
cttcatctaagattttcatatcttgttgcacttctgcaagaatggaattaatatcatcaacattttcaaa-----aactagatcaacattaatatggatt |
324 |
Q |
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| T |
17108497 |
cttcatctaagattttcatatcttgttgcacttctgcaaaaatggaattaatatcatcaacatcttcgaaaacgtaactaggtcaacattaatatacatt |
17108398 |
T |
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| Q |
325 |
tgaatttcctgcacaacctgtggtgatccaacaagcaccccattatcggcgtcttcattaatatt |
389 |
Q |
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| T |
17108397 |
tgagtttcctgcacaacctgtggtgatccaacaagcaccccattatcggcgtcttcattaatatt |
17108333 |
T |
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