View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_83 (Length: 382)
Name: NF1139_high_83
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_83 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 98 - 369
Target Start/End: Original strand, 30768496 - 30768767
Alignment:
| Q |
98 |
ccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttggtt |
197 |
Q |
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| T |
30768496 |
ccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttggtt |
30768595 |
T |
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| Q |
198 |
ttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768596 |
ttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccct |
30768695 |
T |
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| Q |
298 |
acaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccct |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768696 |
acaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccct |
30768767 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
272 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
322 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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