View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_84 (Length: 382)
Name: NF1139_high_84
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 80 - 353
Target Start/End: Original strand, 29226961 - 29227226
Alignment:
| Q |
80 |
agcaccacagatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagtt |
179 |
Q |
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| T |
29226961 |
agcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagtt |
29227060 |
T |
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| Q |
180 |
gcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaact |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29227061 |
gcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgttt-----ct |
29227155 |
T |
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| Q |
280 |
tatctttgtgatctctaaggaaataaaatgaaaagagaataaataaactattggtgttattaatatataagaag |
353 |
Q |
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| T |
29227156 |
tatctttg---tctctaaggaaaaaatatgaaaagagaataaataaactattggtgttattaatatataagaag |
29227226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 29145012 - 29144797
Alignment:
| Q |
80 |
agcaccacagatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagtt |
179 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145012 |
agcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagtt |
29144913 |
T |
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| Q |
180 |
gcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaact |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144912 |
gcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaact |
29144813 |
T |
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| Q |
280 |
tatctttgtgatctct |
295 |
Q |
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| T |
29144812 |
tatctttgtgatctct |
29144797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 5306846 - 5307016
Alignment:
| Q |
92 |
agcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatatttgc |
191 |
Q |
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|||||||||||| |||||||| ||| |||||||||||||| |||| || |||||||| ||||| ||||||| |||||| ||||||||| ||||||||||| |
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| T |
5306846 |
agcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgacccttgataaaagttgtatcccagttccaaatatttgc |
5306945 |
T |
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| Q |
192 |
actaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt |
262 |
Q |
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||||||||||| |||||||| ||||| || || |||||||||| |||||||||| | ||||||||||||| |
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| T |
5306946 |
actaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagttctctctgtgtt |
5307016 |
T |
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