View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_92 (Length: 365)
Name: NF1139_high_92
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_92 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 349
Target Start/End: Original strand, 7291767 - 7292069
Alignment:
| Q |
31 |
tataatgtaaaattaagttaaatgttattgaaacaattttgccattaatcacctcc-ttgtgtacgcccaaatctcacgaatcttgtctaagttgtacac |
129 |
Q |
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| T |
7291767 |
tataatgtaaaattaagttaaatgttattgaatcaattttgccattaatcacctcccttgtgtacgcccaaatctcacgaatcttgtct---ttgtacac |
7291863 |
T |
|
| Q |
130 |
atgtttgttttgtattggttacaaacttccacgtacacactgtttctccagtgttccaaaactaccaacaaccctcttcacgacataatccagaactttc |
229 |
Q |
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| T |
7291864 |
atgtttgttttgtattggttacaaacttccacgtacacactgtttctccagtgttccaaaactaccaacaaccctcttcacgacataatccagaactttc |
7291963 |
T |
|
| Q |
230 |
cattcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgttttgtctttatcaaattcaattcaattcaatggcaggttcatc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
7291964 |
cattcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgtt---------tca-----aattcaattcaatggcaggttcatc |
7292049 |
T |
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| Q |
330 |
tcaaaccactgtccttgtta |
349 |
Q |
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|||||||||||||||||||| |
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| T |
7292050 |
tcaaaccactgtccttgtta |
7292069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 44339678 - 44339546
Alignment:
| Q |
217 |
atccagaactttccattcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgttttgtctttatcaaattcaattcaattcaa |
316 |
Q |
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| T |
44339678 |
atccagaaccttcttttcttcatcggcatcataagtatcacattttcaatccattgagtattgtttttgttttgtctctatcaaattcggttcaattcaa |
44339579 |
T |
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| Q |
317 |
tggcaggttcatctcaaaccactgtccttgtta |
349 |
Q |
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| T |
44339578 |
tggcaggttcatctcaaaccactgtccttgtta |
44339546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 13568074 - 13567968
Alignment:
| Q |
242 |
tcatcatcagtatcacattttcaatccattgaacattgttattgttttgtctttatcaaattcaattcaattcaatggcaggttcatctcaaaccactgt |
341 |
Q |
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|||||||||||||||| |||||||||||| || |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13568074 |
tcatcatcagtatcaccttttcaatccat-gagtattgtttttgttttgtctctatcaaattcaattcaatttaatggcaggttcatctcaaaccactgt |
13567976 |
T |
|
| Q |
342 |
ccttgtta |
349 |
Q |
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|||||||| |
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| T |
13567975 |
ccttgtta |
13567968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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