View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_high_96 (Length: 361)
Name: NF1139_high_96
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_96 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0604 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 21971697 - 21971349
Alignment:
| Q |
1 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21971697 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcacagcattgaaacagggcctatgttccgcgatataaatattacaaa |
21971598 |
T |
|
| Q |
101 |
tggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21971597 |
tggttccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
21971498 |
T |
|
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21971497 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
21971398 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21971397 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
21971349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 20205136 - 20204788
Alignment:
| Q |
1 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||| ||||||| | || | |||||||| | |||||||| ||||||||||| |||| || |
|
|
| T |
20205136 |
gtataatttggtacagccattgcttacttcgctattcaaatcagtatttcttcaatcactttgaaacaagacctatgtttagcgatataaatgttaccaa |
20205037 |
T |
|
| Q |
101 |
tggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
200 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| | ||| | |
|
|
| T |
20205036 |
tgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgaca |
20204937 |
T |
|
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | | | || ||||||||||||||||||||||||| |
|
|
| T |
20204936 |
aattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatga |
20204837 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20204836 |
tcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaat |
20204788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 22099159 - 22098811
Alignment:
| Q |
1 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||| ||||||| | || | |||||||| | |||||||| ||||||||||| |||| || |
|
|
| T |
22099159 |
gtataatttggtacagccattgcttacttcgctattcaaatcagtatttcttcaatcactttgaaacaagacctatgtttagcgatataaatgttaccaa |
22099060 |
T |
|
| Q |
101 |
tggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
200 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| | ||| | |
|
|
| T |
22099059 |
tgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgaca |
22098960 |
T |
|
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | | | || ||||||||||||||||||||||||| |
|
|
| T |
22098959 |
aattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatga |
22098860 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22098859 |
tcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaat |
22098811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 82 - 349
Target Start/End: Complemental strand, 20085735 - 20085468
Alignment:
| Q |
82 |
gcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaa |
181 |
Q |
| |
|
||||||||||||| || || | ||||||| | ||||| |||||||||| | | ||||||||||||| |||||| |||||| |||| ||| ||| ||| |
|
|
| T |
20085735 |
gcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattatcaaatcagttatctcaacttgcgaatgatacaggggacag |
20085636 |
T |
|
| Q |
182 |
cgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaat |
281 |
Q |
| |
|
| |||| |||| || |||||||||| | |||||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
20085635 |
tggtgaaagatataagactaattcattaaaactaaatgatgtacaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgcact |
20085536 |
T |
|
| Q |
282 |
tcatgtctaaatgatatgatcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|| |||||||||||| |||||| || || |||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
20085535 |
tcttgtctaaatgatgtgatcaatacagcgattccatggtcaaatttgggtagtgttgggggaagaat |
20085468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 24385789 - 24385914
Alignment:
| Q |
224 |
acaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatgatcagtagagaaattccatggtca |
323 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||| || || ||||||||||| | |
|
|
| T |
24385789 |
acaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgcgcttcttgtctaaatgatgtgatcgttacagcaattccatggtaa |
24385888 |
T |
|
| Q |
324 |
tttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|||||| |||||||| |||||||| |
|
|
| T |
24385889 |
aatttgggtagtgttgggggaagaat |
24385914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 20237729 - 20237381
Alignment:
| Q |
1 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaa |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| || || | ||| | || ||| |||||| | ||||||| | ||||||||||| || | |
|
|
| T |
20237729 |
gtataatttggtacagccactgcttgcttcgctattctgatcggaaattcttctctaacatcgaaacaagtcctatgtatagagatataaatatcaccga |
20237630 |
T |
|
| Q |
101 |
tggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
200 |
Q |
| |
|
| ||||||| | ||||| ||| |||||| | | ||||||||||||| |||| | |||||| |||| || ||| ||| || |||| ||| || |
|
|
| T |
20237629 |
agattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgact |
20237530 |
T |
|
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||| |||||||| ||| ||||||||| | ||| |
|
|
| T |
20237529 |
aattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagatttgtctagtgaggattgcgcttcttgtctaaatactgtga |
20237430 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|| || || |||||||||| || |||||| |||||||| |||||||| |
|
|
| T |
20237429 |
tcgttacagcaattccatggccaaatttgggcagtgttgggggaagaat |
20237381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 22131713 - 22131365
Alignment:
| Q |
1 |
gtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaa |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| || || | ||| | || ||| |||||| | ||||||| | ||||||||||| || | |
|
|
| T |
22131713 |
gtataatttggtacagccactgcttgcttcgctattctgatcggaaattcttctctaacatcgaaacaagtcctatgtatagagatataaatatcaccga |
22131614 |
T |
|
| Q |
101 |
tggttccatcccggaccaagacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaa |
200 |
Q |
| |
|
| ||||||| | ||||| ||| |||||| | | ||||||||||||| |||| | |||||| |||| || ||| ||| || |||| ||| || |
|
|
| T |
22131613 |
agattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgact |
22131514 |
T |
|
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||| |||||||| ||| ||||||||| | ||| |
|
|
| T |
22131513 |
aattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagatttgtctagtgaggattgcgcttcttgtctaaatactgtga |
22131414 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|| || || |||||||||| || |||||| |||||||| |||||||| |
|
|
| T |
22131413 |
tcgttacagcaattccatggccaaatttgggcagtgttgggggaagaat |
22131365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 18997131 - 18997025
Alignment:
| Q |
217 |
atgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatgatcagtagagaaattcc |
316 |
Q |
| |
|
||||| |||||| ||||||| ||||| ||||||||| ||||||||||||| ||||||||| ||| |||||||| ||| |||||| ||||| |||||| |
|
|
| T |
18997131 |
atgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcacttcttgtctaaaggatgtgatcaatagagcaattcc |
18997032 |
T |
|
| Q |
317 |
atggtca |
323 |
Q |
| |
|
||||||| |
|
|
| T |
18997031 |
atggtca |
18997025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 22205544 - 22205698
Alignment:
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| ||||| ||||||||| ||||||||||||| ||| |||| | | ||||||||| || ||| |
|
|
| T |
22205544 |
aattcattaaaactgaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtga |
22205643 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaataatcta |
355 |
Q |
| |
|
||| || | ||||||||||||| ||| || |||||||| |||||||| ||||| |
|
|
| T |
22205644 |
tcactacatcaattccatggtcaaatttcggtagtgttgggggaagaattatcta |
22205698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 18981337 - 18981290
Alignment:
| Q |
115 |
accaagacttgttcacaaatgcattatcaaatcaattatctgaacttg |
162 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
18981337 |
accaaaacttgttcactagtgcattatcaaatcaattatctcaacttg |
18981290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 18981220 - 18981156
Alignment:
| Q |
285 |
tgtctaaatgatatgatcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|||||||||||| |||| | || || ||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
18981220 |
tgtctaaatgatgtgattactacagcaattccatggtcaaatttgggtagtgttgggggaagaat |
18981156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 48373 - 48527
Alignment:
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||| ||||||||| | |||||||||||||||||||||| | | |||||||||||| ||| |
|
|
| T |
48373 |
aattcattaaaactgaatgataaacaaaccttgtatagtcttgcacaatgtacgagagatttgtctagtcaggattgctctacttgtctaaatgatgtga |
48472 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaataatcta |
355 |
Q |
| |
|
|| || || ||||||||||||| |||||| |||||||| |||||||| ||||| |
|
|
| T |
48473 |
tcgttacagcaattccatggtcaaatttgggtagtgttgggggaagaattatcta |
48527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 15569 - 15415
Alignment:
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||| ||| |||| | | ||||||||| || ||| |
|
|
| T |
15569 |
aattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtga |
15470 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaataatcta |
355 |
Q |
| |
|
||| || | ||||||||||||| |||||| |||||||| |||||||| ||||| |
|
|
| T |
15469 |
tcactacatcaattccatggtcaaatttgggtagtgttgggggaagaattatcta |
15415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 5900 - 6048
Alignment:
| Q |
201 |
aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatga |
300 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| ||||| ||||||||| ||||||||||||| |||||||| | | |||||||||||| ||| |
|
|
| T |
5900 |
aattcattaaaactgaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcgctacttgtctaaatgatgtga |
5999 |
T |
|
| Q |
301 |
tcagtagagaaattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
|| || || |||||| |||||| |||||| |||||||| || ||||| |
|
|
| T |
6000 |
tcgctacagcaattccctggtcaaatttgggtagtgttgggggcagaat |
6048 |
T |
|
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Target: scaffold0604 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 5587 - 5549
Alignment:
| Q |
311 |
aattccatggtcatttttgggaagtgttggaggaagaat |
349 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5587 |
aattccatggtcattgttgggaagtgttggaggaagaat |
5549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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