View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_98 (Length: 354)
Name: NF1139_high_98
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 29421694 - 29421362
Alignment:
| Q |
15 |
tatccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatgagccagcaagcagattcagccaacaacaaaatgattagctag |
114 |
Q |
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| T |
29421694 |
tatccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatgagccagcaagcagattcagccagcaacaaaatgattagctag |
29421595 |
T |
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| Q |
115 |
aaactaaacacaacactgtggtagagtcttgtagttgattcatcttgattaattactaaacaag-ttactaactcagcagcaagaattaacaactcggta |
213 |
Q |
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| T |
29421594 |
aaactaaacacaacactctggtagagttttgtagttgattcatcttgattaattactaaacaagtttactaactcagcagcaagaattaacaactcggta |
29421495 |
T |
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| Q |
214 |
tggatttaagatcatcgacaaaaatctggnnnnnnntatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaagga |
313 |
Q |
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| T |
29421494 |
tggatttaagatcatcgacaaaaatctgg-aaaaaatatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaaggg |
29421396 |
T |
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| Q |
314 |
aatcaagacagcttcaaacagctagccatcaaca |
347 |
Q |
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| T |
29421395 |
aaccaagacagcttcaaacagctagccatcaaca |
29421362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29457708 - 29457654
Alignment:
| Q |
18 |
ccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatg |
72 |
Q |
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| T |
29457708 |
ccacaaaactaagccaataaaaacaaagtactaaccagccaatgtagcataaatg |
29457654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 29457467 - 29457415
Alignment:
| Q |
258 |
atagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaa |
310 |
Q |
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| T |
29457467 |
atagaggaaaaagtattggcaaagtcgtaagaagttaagtttccaatttaaaa |
29457415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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