View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_101 (Length: 376)
Name: NF1139_low_101
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 43099938 - 43099652
Alignment:
| Q |
1 |
gcgcttcctacccctattcatctcctcctccaccaccaccatcttcataccccaccacattctatcaagcaccagcaaccaccttcacatatgaagaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099938 |
gcgcttcctacccctattcatctcctcctccaccacctccatcttcataccccaccacattctatcaagcaccagcaaccaccttcacatatgaagaaga |
43099839 |
T |
|
| Q |
101 |
acccccggctgttgtaagatccttcctctgcggcttcatctctgtcatgacggccatcgtagctctcttcggcttaatctccttgatcggctattttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099838 |
acccccggctgttgtaagatccttcctctgcggcttcatctctgtcatgaccgccatcgtagctctcttcggcttaatctccttgatcggctattttgtt |
43099739 |
T |
|
| Q |
201 |
ctcaaaccccgtatccctgagttcagtgtcaattcagcttcacttacctcattcaatttgaccggctccggtctcaatgcaaaatgg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099738 |
ctcaaaccccgtatccctgagttcagtgtcaattcagcttcacttacctcattcaatttgaccggctccggtctcaatgcaaaatgg |
43099652 |
T |
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