View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_106 (Length: 363)
Name: NF1139_low_106
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 350
Target Start/End: Original strand, 52828317 - 52828637
Alignment:
| Q |
30 |
cctgtgtcgtattgtatgaattacaattgcttggtctttaagcctacgactccattgaacgtatcctacaagatctattggcttagtggagacggatagt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52828317 |
cctgtgtcgtattgtatgaattacaattgcttggtctttaagcctacgactccattgaacgtatcctacaagatctattggcttagtggagacggatagt |
52828416 |
T |
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| Q |
130 |
aaagataagtagctaccatccaaactagatagatccaatcacttatcacttatacaatagtaacaataataacatgcctccaaccacgtgaaatccaata |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
52828417 |
aaagataagtagctaccatccaaactagatagatccaatcacttatcacttatacaatagtaacaataataacttgtctccaaccacgtgaaatccaata |
52828516 |
T |
|
| Q |
230 |
tcaaactaaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcacttttctatagtactattctactaactactaatcagat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52828517 |
tcaaactaaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcacttttctatagtactattgtactaactactaatcagat |
52828616 |
T |
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| Q |
330 |
accatacgttggtcctaatat |
350 |
Q |
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||||||||||||||||||||| |
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| T |
52828617 |
accatacgttggtcctaatat |
52828637 |
T |
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