View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_107 (Length: 363)
Name: NF1139_low_107
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_107 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 6240473 - 6240121
Alignment:
| Q |
1 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6240473 |
catgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccat |
6240374 |
T |
|
| Q |
101 |
aatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcacaagttgagaccactggttttttctttgtacaccatgatattgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
6240373 |
aatccaaccatattgcgtgacatgctgctaaataacttactataaaatcagattcacaagttgagaccacaggttgtttctttgtacaccatgatattgg |
6240274 |
T |
|
| Q |
201 |
agcattcataaacttaaacaagtacccataagtgannnnnnnngtcttgcttatctccataccaatttgcagttgaataagcaattaggttcatagtagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6240273 |
agcattcataaacttaaacaagtacccataagtgattttttttgtcttgcttatctccataccaatttgcggttgaataagcaattaggttcatagtagc |
6240174 |
T |
|
| Q |
301 |
tgatgctagtaaaatagtttcctatttctcatgcatatttagtgcaagtataa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6240173 |
tgatgctagtaaaatagtttcctatttctcatgcatatttagtggaagtataa |
6240121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6211537 - 6211432
Alignment:
| Q |
1 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211537 |
catgaagcattagattcttagctaaatctatg-cagatttttttatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
6211439 |
T |
|
| Q |
101 |
aatccaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
6211438 |
aatccaa |
6211432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 17507451 - 17507633
Alignment:
| Q |
48 |
aatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaac |
147 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||| | |||||| | ||||||| ||||||||||||||| ||| | ||||| | |
|
|
| T |
17507451 |
aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctgctatatat |
17507550 |
T |
|
| Q |
148 |
tcagattcacaagttgag------accactggttttttctttgtacaccatgatattggagcattcataaacttaaacaagta |
224 |
Q |
| |
|
|| ||||| || |||||| |||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
17507551 |
tctgattctcatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagta |
17507633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 23428087 - 23428179
Alignment:
| Q |
65 |
gcttgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcac |
157 |
Q |
| |
|
||||||||||||||||||||| |||| | ||| |||||||||||||||||| |||||||| ||||| ||| |||| || ||||| |||||| |
|
|
| T |
23428087 |
gcttgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagcaacctactttatactcatattcac |
23428179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 30066986 - 30066877
Alignment:
| Q |
55 |
aatgcaataggcttgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagatt |
154 |
Q |
| |
|
||||||||||||||||| | ||| || |||| ||| || ||| ||||||| | ||||| ||| ||||||||||||||| | | ||| || ||||||||| |
|
|
| T |
30066986 |
aatgcaataggcttgcagatttcaatattcagttcctttaacacataatctagccatactgcttgacatgctgctaaacaccctacaatgtactcagatt |
30066887 |
T |
|
| Q |
155 |
cacaagttga |
164 |
Q |
| |
|
|||||||||| |
|
|
| T |
30066886 |
cacaagttga |
30066877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 15565465 - 15565514
Alignment:
| Q |
172 |
ggttttttctttgtacaccatgatattggagcattcataaacttaaacaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
15565465 |
ggtttcttctttgtacaccatgatataagagcattcataaatttgaacaa |
15565514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 15490090 - 15490147
Alignment:
| Q |
177 |
tttctttgtacaccatgatattggagcattcataaacttaaacaagtacccataagtg |
234 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| || |||| |||||||||| |||||| |
|
|
| T |
15490090 |
tttccttgtacaccatgatattagaacattcagaatcttatacaagtacccttaagtg |
15490147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 24650708 - 24650672
Alignment:
| Q |
79 |
atcttcatttctttcaacccataatccaaccatattg |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24650708 |
atcttcatttctttcaacacataatccaaccgtattg |
24650672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University