View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_11 (Length: 622)

Name: NF1139_low_11
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_11
NF1139_low_11
[»] chr8 (2 HSPs)
chr8 (8-520)||(41821523-41822036)
chr8 (446-520)||(3732057-3732131)
[»] scaffold0576 (1 HSPs)
scaffold0576 (446-520)||(2499-2573)
[»] chr7 (1 HSPs)
chr7 (446-520)||(2753963-2754037)
[»] chr6 (1 HSPs)
chr6 (446-520)||(15357510-15357584)
[»] chr2 (1 HSPs)
chr2 (446-520)||(28656279-28656353)
[»] chr1 (3 HSPs)
chr1 (446-520)||(20262448-20262522)
chr1 (26-88)||(50644197-50644259)
chr1 (23-88)||(2295159-2295224)
[»] chr3 (2 HSPs)
chr3 (23-78)||(42320276-42320331)
chr3 (49-89)||(42799908-42799948)
[»] chr4 (1 HSPs)
chr4 (23-88)||(15173245-15173310)


Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 41821523 - 41822036
Alignment:
Q  8 agataatactatgttaaattgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgcgagtagataaatg-agacatgccttttgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||     
T  41821523 agataatactatgttaaattgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgtgagtagataaatggagacatgccttgtgc 41821622  T
Q  107 taggtggaatgcagattccttgctatggaggaacccgcattcacgcacattcttgacgtggattgcgttcggtttctagtagaattatcattatgattga 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  41821623 taggtggaatgcagattccttgctatgtaggaacccgcattcacgcacattcttgacctggattgcgttcggtgtctagtagaattatcattatgattga 41821722  T
Q  207 ataaaatttacttaatggtggtgttgtgctttacaggtttccaagataacgtctgaagagtggaaaaacatgacagaagaacaaaaaaggccttatgaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821723 ataaaatttacttaatggtggtgttgtgctttacaggtttccaagataacggctgaagagtggaaaaacatgacagaagaacaaaaaaggccttatgaag 41821822  T
Q  307 aggtacaattatgcaaaaccattggttttcattcatannnnnnngaagctatttgatctttctcacactctacttaatttgaaacttttagattgcaaag 406  Q
    ||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821823 aggtacagttatgcaaaaccattggttttcattcatatttttttgaagctatttgatctttctcacactctacttaatttgaaacttttagattgcaaag 41821922  T
Q  407 aagaacagggagcaatatgctcaagaaatggaggcttacaaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821923 aagaacagggagcaatatgctcaagaaatggaggcttacaaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaac 41822022  T
Q  507 ttcagaaacatgaa 520  Q
    ||||||||||||||    
T  41822023 ttcagaaacatgaa 41822036  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 3732131 - 3732057
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3732131 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 3732057  T

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Target: scaffold0576 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 2573 - 2499
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2573 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 2499  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 2753963 - 2754037
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2753963 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 2754037  T

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Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 15357584 - 15357510
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15357584 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 15357510  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 28656353 - 28656279
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  28656353 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaaaagcatatgaaacttcacaaacatgaa 28656279  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 20262522 - 20262448
Alignment:
Q  446 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 520  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  20262522 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaaaagcatatgaaacttcacaaacatgaa 20262448  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 50644259 - 50644197
Alignment:
Q  26 ttgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgcgagtagataa 88  Q
    |||||||||||| |||| || | |||||||||| ||||||||||||||||||  |||||||||    
T  50644259 ttgtcgtaagttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataa 50644197  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 2295159 - 2295224
Alignment:
Q  23 aaattgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgcgagtagataa 88  Q
    |||||||| |||| | |||| || | |||||||||| ||||||||||||| ||||| |||||||||    
T  2295159 aaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataa 2295224  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 42320331 - 42320276
Alignment:
Q  23 aaattgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgc 78  Q
    |||||||| ||||||  ||| ||||||||||||||| ||||||||||||| |||||    
T  42320331 aaattgtcttaagttgatttcatgaattctcccaaacagtctcacaaaacttatgc 42320276  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 42799948 - 42799908
Alignment:
Q  49 ttctcccaaagagtctcacaaaacatatgcgagtagataaa 89  Q
    |||||||||||||| ||||||||||||||  ||||||||||    
T  42799948 ttctcccaaagagtttcacaaaacatatgtcagtagataaa 42799908  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 15173310 - 15173245
Alignment:
Q  23 aaattgtcgtaagttatttttatgaattctcccaaagagtctcacaaaacatatgcgagtagataa 88  Q
    |||||||| |||| |||||| || || ||||||||| ||||||||||||| ||||  |||||||||    
T  15173310 aaattgtcataagctattttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataa 15173245  T

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