View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_110 (Length: 356)
Name: NF1139_low_110
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 50511271 - 50511145
Alignment:
| Q |
1 |
aagttttgttatccatcacgaatattcagttcacacactttgtccattaataatttatgctacacgcctacaaatctgtaaaatactttctgttatatag |
100 |
Q |
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| T |
50511271 |
aagttttgttatccatcacgaatattcagttcacacactttgtccattaataatttatgctacacgcctacacctctgtaaaatactttctgttatatag |
50511172 |
T |
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| Q |
101 |
tgtttttaaactcttacttatatacat |
127 |
Q |
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| T |
50511171 |
tgtttttaaactcttacttatatacat |
50511145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 50511128 - 50510955
Alignment:
| Q |
154 |
ctcttacttatatacatggacggacaaccataaattatggggtaaacgaccccactaacaaaaaggttgattgatgatgattatcacagaattgtagttg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
50511128 |
ctcttacttatatacatggacggacaaccataaattatggggtaaacgaccccactaacaaaaaggttgattgataatgatta---------tgtagttg |
50511038 |
T |
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| Q |
254 |
aatttaac---------------aaaaatatcttaacaaaaaattgatgttatggataggtgtgcaagtatgtatattattcg |
321 |
Q |
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| T |
50511037 |
aatttaacaaaaaattgaggaaaaaaaatatcttaacaaaaaattgatgttatggataggtgtgcaagtatgtattttattcg |
50510955 |
T |
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