View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_115 (Length: 350)
Name: NF1139_low_115
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_115 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 50511512 - 50511224
Alignment:
| Q |
30 |
atttgaggtatttcttcttccaccaaagtaaacgtccaaacaagaggatagtggaattatgctctacttgttttgggaaaatcagaaattctgttaaaaa |
129 |
Q |
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| T |
50511512 |
atttgaggtatttcttcttccaccaaagtaa-cgtccaaacaagaggatagtggaattatgctctacttgttttgggaaaatcagaaattctgttaaaaa |
50511414 |
T |
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| Q |
130 |
ataattaaatatatttttagtctatataaaaa-tacttttacttaaatctcttagctagctagtactctagtttttaagaatgaaattcagtatttgaga |
228 |
Q |
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| T |
50511413 |
agaattaaatatatttttagtttatataaaaaatacttttacttaaatctcttagctagctagtactctagtttttaagaatgaaattcagtatttgaga |
50511314 |
T |
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| Q |
229 |
gtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttttgttatccatcacgaatattcagttcacacactttgtccatt |
318 |
Q |
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| T |
50511313 |
gtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttttgttatccatcacgaatattcagttcacacactttgtccatt |
50511224 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 38570834 - 38570864
Alignment:
| Q |
313 |
tccattgctttctctccctcatcttcatctc |
343 |
Q |
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| T |
38570834 |
tccattgctttctctccctcatcttcatctc |
38570864 |
T |
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