View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_116 (Length: 350)
Name: NF1139_low_116
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_116 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 36740809 - 36741117
Alignment:
| Q |
30 |
atttgatgtgcatttgtacaccacgtagatccccaattaaattattaatttcggccatttagccatccacctattgcatttgctatccatttcatgtatc |
129 |
Q |
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| T |
36740809 |
atttgatgtgcatttgtacaccacgtagatccccaattaaattattaatttcggccatttagccatccacctattgcatttgctatccgtttcatgtatc |
36740908 |
T |
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| Q |
130 |
tttcttagtcaccaaccaattagattatatggctcagcattatgcataatatatattcaagataattaaacattttgggattattatttcgacatcgttc |
229 |
Q |
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| T |
36740909 |
tttcttagtcaccaaccaattagattatatggctcagcattatgcataatatatattcaagataattaaacattttgggattattagttcgacatcgttc |
36741008 |
T |
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| Q |
230 |
aatatagtaaaggaagtggaaaatcaatgttatatatattgacttaactcttccttataaatccatcgaaaataagtttgtattagattttcttattttg |
329 |
Q |
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| T |
36741009 |
aatataataaaggaagtgggaaatcaatgttatatatattgacttaactcttccttgtaaatccatcgaaaataagtttgtattaaattttcttattttg |
36741108 |
T |
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| Q |
330 |
tcttatatt |
338 |
Q |
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||||||||| |
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| T |
36741109 |
tcttatatt |
36741117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 194 - 341
Target Start/End: Original strand, 36741297 - 36741444
Alignment:
| Q |
194 |
attaaacattttgggattattatttcgacatcgttcaatatagtaaaggaagtggaaaatcaatgttatatatattgacttaactcttccttataaatcc |
293 |
Q |
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||||||||||||| |||||||| || |||||| | ||| |||||||||||| || || ||||||| |||||| ||||||||| ||||| ||||||||| |
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| T |
36741297 |
attaaacattttgagattattagtttgacatcatctaatgtagtaaaggaagagggaagtcaatgtaatatatgttgacttaattcttcgttataaatct |
36741396 |
T |
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| Q |
294 |
atcgaaaataagtttgtattagattttcttattttgtcttatattctt |
341 |
Q |
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||||||| |||||||||||| | |||||| |||| |||||||||||| |
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| T |
36741397 |
gtcgaaaacaagtttgtattaaactttcttcttttatcttatattctt |
36741444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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