View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_117 (Length: 348)
Name: NF1139_low_117
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 36069703 - 36070008
Alignment:
| Q |
30 |
tcaacaaagatcaaattaattgattttattatcaaccggaaaagaaatatcaaacaaaattgattacattagtttaataaatgattttgtattataagtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36069703 |
tcaacaaagatcaaattaattgattttattatcaaccggaaaagaaatatcaaacaaaattgattacattagtttaataaatgattttgtattataagtg |
36069802 |
T |
|
| Q |
130 |
caagtaaaaaattataccaaaacttagtaattttactaaaatactgat---tcatttttcaaagaaatgactaatttgtattaacaaacaaaccttaaag |
226 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36069803 |
caagtaaaaaattaaaccaaaacttagtaattttactaaaatactgatcattcatttttcaaagaaatgactaatctgtattaacaaacaaaccttaaag |
36069902 |
T |
|
| Q |
227 |
gactaaattgactcatcttaaagttatgagatcaaattgaacttaaaaaatgtgttaaggaccaaatgatatttaatccaagataaaatcagactaaaga |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36069903 |
gactaaattgactcatcttaaagttatgagatcaaattgaacttaaaaaatgtgttaaggaccaaatgatatttaatccaagataaaatcaaactaaaga |
36070002 |
T |
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| Q |
327 |
cctata |
332 |
Q |
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|||||| |
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| T |
36070003 |
cctata |
36070008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 27589807 - 27589737
Alignment:
| Q |
260 |
aaattgaacttaaaaaatgtgttaaggaccaaatgatatttaatccaagataaaatcagactaaagaccta |
330 |
Q |
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| T |
27589807 |
aaattgaactttaaaaatatgttaaggactaaatgatatttatgtcaagataaaatcagacgaaacaccta |
27589737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 20761223 - 20761292
Alignment:
| Q |
48 |
attgattttattatcaaccggaaaagaaatatcaaacaaaattgattacattagtttaataaatgattttgt |
119 |
Q |
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| T |
20761223 |
attgattttattatcaatag--aaacaaatatcaaatgaaattgattaaattagtttaatatatgattttgt |
20761292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 20767614 - 20767683
Alignment:
| Q |
48 |
attgattttattatcaaccggaaaagaaatatcaaacaaaattgattacattagtttaataaatgattttgt |
119 |
Q |
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| T |
20767614 |
attgattttattatcaatag--aaacaaatatcaaatgaaattgattaaattagtttaatatatgattttgt |
20767683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 29028691 - 29028787
Alignment:
| Q |
79 |
tcaaacaaaattgattacattagtttaataaatgattttgtattataagtgcaagtaaaaaa-ttataccaaaacttagtaattttactaaaatact |
174 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||| || ||| |||||| ||| ||||||| |||||||||||||||| ||||| |
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| T |
29028691 |
tcaaacaaaattgattacattaatttaataaaagattttgtattataattgtaagaaaaaaagttaaaccaaaatttagtaattttactaatatact |
29028787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 29028991 - 29029078
Alignment:
| Q |
244 |
ttaaagttatgagatcaaattgaacttaaaaaatgtgttaaggaccaaatgatatttaatccaagataaaatcagactaaagacctat |
331 |
Q |
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|||| ||||| | |||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||| |
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| T |
29028991 |
ttaatgttattatatcaaattgaacttcaaaaatgtgttaaggaccaagtgatatttaagccaagataaaatcatactaaacacctat |
29029078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 45048838 - 45048752
Alignment:
| Q |
33 |
acaaagatcaaattaattgattttattatcaaccggaaaagaaatatcaaacaaaattgattacattagtttaataaatgattttgt |
119 |
Q |
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|||||||| ||||| ||||||||||| ||||| | ||||||||||||||| || ||||||| |||||||| ||| |||||||||| |
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| T |
45048838 |
acaaagattaaattgattgattttatcatcaatagaaaaagaaatatcaaatgaatttgattaaattagttttatatatgattttgt |
45048752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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