View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_120 (Length: 345)
Name: NF1139_low_120
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 392680 - 392411
Alignment:
| Q |
30 |
caattatgttattgagaattacaaatgttacttccaatttagtcaatgtgtttattgtggttaaattaagtcatgaaacatcaaataatctcagtgatag |
129 |
Q |
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| T |
392680 |
caattatgttattgagaattacaaatgttacttccaatttagtcaatgtgtttattgtggttaaattaagtcatgaaacatcaaataatctcagtgatag |
392581 |
T |
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| Q |
130 |
agatagcatagctgtagacaaggagagggcccggattaccttttctattagaataaggaagggaatcgctttgattgcttgcgacagcttatcgatgctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392580 |
agatagcatagctgtagacaaggagagggcccggattaccttttctattagaataaggaagggaatcgctttgattgcttgcgacagcttatcgatgctc |
392481 |
T |
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| Q |
230 |
gttagcggctcaaaccagaagtttcagaagcgggcctacagcctcattttgtttaactgaagttgcatac |
299 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392480 |
gttagcagctcaaaccagaagtttcaaaagcgggcctacagcctcattttgtttaactgaagttgcatac |
392411 |
T |
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