View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_123 (Length: 344)
Name: NF1139_low_123
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5394371 - 5394615
Alignment:
| Q |
1 |
ccaatctccaacttcttcaagctttgtgtgcaataacccattttccctcacaatctcttcccacacaccacccatatctttcatcatctccgacaacctc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||| |||||| |
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| T |
5394371 |
ccaatctccaacttcttcaagcttggtgtacaacaattcattctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctc |
5394470 |
T |
|
| Q |
101 |
aactccgacccctcctcaaatccataatcatcgatctcaaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5394471 |
aactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaat |
5394570 |
T |
|
| Q |
201 |
tgaatgtttcattctctgcgttaggatccactgcaccccaaatat |
245 |
Q |
| |
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|||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
5394571 |
tgaatgcttcattctttgcgttaggatccgctgcaccccaaatat |
5394615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5390833 - 5391077
Alignment:
| Q |
1 |
ccaatctccaacttcttcaagctttgtgtgcaataacccattttccctcacaatctcttcccacacaccacccatatctttcatcatctccgacaacctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||| |||||| |
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| T |
5390833 |
ccaatctccaacttcttcaagcttggtgtacaacaattcattctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctc |
5390932 |
T |
|
| Q |
101 |
aactccgacccctcctcaaatccataatcatcgatctcaaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| | |
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| T |
5390933 |
aactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagt |
5391032 |
T |
|
| Q |
201 |
tgaatgtttcattctctgcgttaggatccactgcaccccaaatat |
245 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
5391033 |
tgaatgcttcattctttgcattaggatccactgcaccccaaatat |
5391077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5399552 - 5399796
Alignment:
| Q |
1 |
ccaatctccaacttcttcaagctttgtgtgcaataacccattttccctcacaatctcttcccacacaccacccatatctttcatcatctccgacaacctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||| |||||| |
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|
| T |
5399552 |
ccaatctccaacttcttcaagcttggtgtacaacaattcattctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctc |
5399651 |
T |
|
| Q |
101 |
aactccgacccctcctcaaatccataatcatcgatctcaaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| | |
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|
| T |
5399652 |
aactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagt |
5399751 |
T |
|
| Q |
201 |
tgaatgtttcattctctgcgttaggatccactgcaccccaaatat |
245 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
5399752 |
tgaatgcttcattctttgcattaggatccactgcaccccaaatat |
5399796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 3818833 - 3818940
Alignment:
| Q |
138 |
caaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgtttcattctctgcgttaggatccactgcacc |
237 |
Q |
| |
|
|||| |||||||| | ||||||||||| || |||||| | ||||||||||||||||| |||||||||| |||||||| || | ||||||||||||| | |
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| T |
3818833 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagc |
3818932 |
T |
|
| Q |
238 |
ccaaatat |
245 |
Q |
| |
|
|||||||| |
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|
| T |
3818933 |
ccaaatat |
3818940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 47339044 - 47338937
Alignment:
| Q |
138 |
caaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgtttcattctctgcgttaggatccactgcacc |
237 |
Q |
| |
|
|||| |||||||| | ||||||||||| || |||||| | ||||||||||||||||| |||||||||| |||||||| || | ||||||||||||| | |
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| T |
47339044 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagc |
47338945 |
T |
|
| Q |
238 |
ccaaatat |
245 |
Q |
| |
|
|||||||| |
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|
| T |
47338944 |
ccaaatat |
47338937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 47350071 - 47349948
Alignment:
| Q |
120 |
atccataatcatcgatctcaaactgttccgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgtttcattctctgc |
219 |
Q |
| |
|
||||||| || || |||||||| ||||||| || ||||||||||| ||||||||| | |||||||||||||| || |||||||| | |||||||| || |
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|
| T |
47350071 |
atccatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagc |
47349972 |
T |
|
| Q |
220 |
gttaggatccactgcaccccaaat |
243 |
Q |
| |
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| || |||||||||| ||||||| |
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|
| T |
47349971 |
ataagtatccactgcagcccaaat |
47349948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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