View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_124 (Length: 342)
Name: NF1139_low_124
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_124 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 16960650 - 16960741
Alignment:
| Q |
121 |
agataacaactccaacaatcaataatccaacaactcctatgcatgatgatacaattactgctttactagttgttcccttatgcttctgttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16960650 |
agataacaactccaacaatcaataatccaacaactcctatgcttgatgaaacaactactgctttgcttattgttcccttatgcttctgttgt |
16960741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 43509236 - 43509270
Alignment:
| Q |
236 |
ataaagaagatatttgagtgagtacatttacagta |
270 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43509236 |
ataaagaagatatttgactgagtacatttacagta |
43509270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University