View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_129 (Length: 332)

Name: NF1139_low_129
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_129
NF1139_low_129
[»] chr3 (3 HSPs)
chr3 (71-241)||(20519405-20519578)
chr3 (110-245)||(54437811-54437946)
chr3 (110-242)||(39341204-39341336)
[»] chr8 (6 HSPs)
chr8 (146-242)||(6630320-6630416)
chr8 (162-242)||(6803880-6803960)
chr8 (159-242)||(32166739-32166822)
chr8 (162-232)||(35574589-35574658)
chr8 (93-178)||(34695817-34695902)
chr8 (189-242)||(35574747-35574800)
[»] chr5 (4 HSPs)
chr5 (104-242)||(2243255-2243392)
chr5 (110-220)||(17736714-17736824)
chr5 (146-242)||(7215406-7215502)
chr5 (163-219)||(40483739-40483795)
[»] chr2 (6 HSPs)
chr2 (93-231)||(16576236-16576374)
chr2 (110-240)||(9050065-9050195)
chr2 (93-242)||(38576876-38577024)
chr2 (140-229)||(17606579-17606668)
chr2 (159-219)||(38576738-38576798)
chr2 (82-232)||(16863435-16863583)
[»] chr7 (1 HSPs)
chr7 (200-242)||(7463777-7463819)
[»] chr1 (2 HSPs)
chr1 (161-240)||(7104321-7104400)
chr1 (153-232)||(38839609-38839688)
[»] chr6 (1 HSPs)
chr6 (154-232)||(32047039-32047117)
[»] chr4 (1 HSPs)
chr4 (110-242)||(25062495-25062627)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 20519578 - 20519405
Alignment:
Q  71 ttattcttatcaaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataa-----aactttttcattttcttca 165  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||     |||||||||||||||||||    
T  20519578 ttattcttataaaaaattccttttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattttcttca 20519479  T
Q  166 ttcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattc 241  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||| ||||  ||||||||||||||| ||||||||    
T  20519478 ttcaacgtgtgatatccatctttttcgttccaaaattgaatcatatttgt--ttacgagtaaattacccccaattc 20519405  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 54437811 - 54437946
Alignment:
Q  110 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 209  Q
    |||||||||||||||||||||||| | ||||  || |||||| ||||| ||| ||||| |||  ||| | ||| |||| ||| ||  |||||| ||||||    
T  54437811 cttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatcat 54437910  T
Q  210 acttgtcattacgagtaaattactcccaattcaaca 245  Q
    | || ||||||   ||||||||| || |||||||||    
T  54437911 atttatcattagaggtaaattacccctaattcaaca 54437946  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 39341204 - 39341336
Alignment:
Q  110 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 209  Q
    ||||| || |||||||||||| || | || | ||| |||||||||||| | ||||||||||| || ||| ||| | | |||||||| ||||| ||||| |    
T  39341204 cttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatctt 39341303  T
Q  210 acttgtcattacgagtaaattactcccaattca 242  Q
    | || ||||||   ||||||||| || ||||||    
T  39341304 atttatcattagaggtaaattacccctaattca 39341336  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 6630416 - 6630320
Alignment:
Q  146 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    |||||||||||| || |||||||||| |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | ||||||||||| |||||||    
T  6630416 aaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattca 6630320  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 6803960 - 6803880
Alignment:
Q  162 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    |||||||| | |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | |||||||||||||||||||    
T  6803960 ttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaattca 6803880  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 32166822 - 32166739
Alignment:
Q  159 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    ||||||||| ||| |||||| | | |||  ||||||||||||||||||| ||||||||||||   ||||||||| |||||||||    
T  32166822 ttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattca 32166739  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 35574658 - 35574589
Alignment:
Q  162 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 232  Q
    |||||||||| ||| || ||| |||| |||||||||||||||||||||| | ||||| | |||||||||||    
T  35574658 ttcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata-tcgtcataaggagtaaattac 35574589  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 34695817 - 34695902
Alignment:
Q  93 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgat 178  Q
    |||||||||||||| | |||||||||||||| ||||||  | | |||||||| ||| || ||||  | ||||||||||| ||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgat 34695902  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35574800 - 35574747
Alignment:
Q  189 ttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    |||||||||||||||||||||| |||||||||   ||||||||| | |||||||    
T  35574800 ttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattca 35574747  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 2243392 - 2243255
Alignment:
Q  104 tttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcg 203  Q
    ||||| |||||||| |||||||||||| || | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||||||||||| | |||||    
T  2243392 tttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcg 2243293  T
Q  204 aatcatacttgtcattacgagtaaattactcccaattca 242  Q
    |||  ||||||||||||   ||||||||| |||||||||    
T  2243292 aattttacttgtcattagaggtaaattac-cccaattca 2243255  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 17736824 - 17736714
Alignment:
Q  110 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 209  Q
    ||||||| || |||||||||| || | || | ||| |||||| ||||| ||||||| ||||| |||||| ||  |||||||||||| | ||||||||| |    
T  17736824 cttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgt 17736725  T
Q  210 acttgtcatta 220  Q
    |||||||||||    
T  17736724 acttgtcatta 17736714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 7215502 - 7215406
Alignment:
Q  146 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    |||||||||||| ||||||||||||| |||||| | | |||  ||||||||| || || |||||| |||| ||||   |||||||| || |||||||    
T  7215502 aaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattca 7215406  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 40483739 - 40483795
Alignment:
Q  163 tcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 219  Q
    ||||||||| |||||| | | |||  ||||||||||||||||||||||||| |||||    
T  40483739 tcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 16576236 - 16576374
Alignment:
Q  93 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 192  Q
    ||||||||| |||| | |||||||||| ||||||||||  | | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||  ||||    
T  16576236 ttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 16576335  T
Q  193 ttccaaaatcgaatcatacttgtcattacgagtaaatta 231  Q
    ||||| ||||||||||||||| |||||| | ||||||||    
T  16576336 ttccagaatcgaatcatacttatcattaggggtaaatta 16576374  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 9050195 - 9050065
Alignment:
Q  110 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 209  Q
    ||||| ||||||||||||||| |||| || |  |  |||||| ||||| | | ||||||||| | |||| ||| |||  |||||| ||||||||||||||    
T  9050195 cttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcat 9050096  T
Q  210 acttgtcattacgagtaaattactcccaatt 240  Q
     |||||||||| | ||||||||||| |||||    
T  9050095 gcttgtcattaagggtaaattactctcaatt 9050065  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 38577024 - 38576876
Alignment:
Q  93 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 192  Q
    |||||||||| ||| |  ||| |||||||||||||||| || |||| |  || ||| || ||||| |  |||||||||| |||||| ||| |||  ||||    
T  38577024 ttttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcg 38576925  T
Q  193 ttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    | ||| |||| ||||||| ||||||||| ||||||||||| |||||||||    
T  38576924 taccataatcaaatcatatttgtcattaggagtaaattac-cccaattca 38576876  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 17606668 - 17606579
Alignment:
Q  140 attataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaat 229  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||| |||  ||||||| | |||| |||| |||||||||||  ||||||||    
T  17606668 attatcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcattgggagtaaat 17606579  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 38576798 - 38576738
Alignment:
Q  159 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 219  Q
    ||||||||||||| |||| | ||| | | |||| |||||||||||||||||||||||||||    
T  38576798 ttcttcattcaacatgtgttctccatatccttcattccaaaatcgaatcatacttgtcatt 38576738  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 16863435 - 16863583
Alignment:
Q  82 aaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatc 181  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||||| || | || |  || ||| || ||||| ||||| ||||||  |||||| |     
T  16863435 aaaaattccttttt-cttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatcta 16863532  T
Q  182 cgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 232  Q
    | ||| |||||||  | ||||||||| |||||||||||  | |||||||||    
T  16863533 catctccttcgttatagaatcgaatcctacttgtcattgagcgtaaattac 16863583  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 7463777 - 7463819
Alignment:
Q  200 atcgaatcatacttgtcattacgagtaaattactcccaattca 242  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  7463777 atcgaatcatacttgtcgttacgagtaaattactccgaattca 7463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 7104321 - 7104400
Alignment:
Q  161 cttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaatt 240  Q
    ||||||||||| ||| |||| | |||  |||||| || ||||||||||||||||||||||  ||||| |||| |||||||    
T  7104321 cttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 38839688 - 38839609
Alignment:
Q  153 ttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 232  Q
    ||||| |||||||||| || |||||| |   |||||||||||||| ||||||||| ||||| |||||| |||| ||||||    
T  38839688 ttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattac 38839609  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 32047039 - 32047117
Alignment:
Q  154 tcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 232  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||| ||| ||||| || |||||| ||  ||||||||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattac 32047117  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 25062495 - 25062627
Alignment:
Q  110 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 209  Q
    |||||||||| ||||| |||| || | || | ||| |||||| ||||| |||||| |||||| ||| || |   ||||||||  |||| ||| |||||||    
T  25062495 cttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcat 25062594  T
Q  210 acttgtcattacgagtaaattactcccaattca 242  Q
    ||||||||| |   |||||||||| ||||||||    
T  25062595 acttgtcatgagttgtaaattacttccaattca 25062627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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