View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_132 (Length: 325)
Name: NF1139_low_132
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_132 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 145 - 318
Target Start/End: Complemental strand, 39943192 - 39943019
Alignment:
| Q |
145 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcagttgcttttatactgtatagtttataatccaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39943192 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcggttgcttttatactgtatagtttataatccaa |
39943093 |
T |
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| Q |
245 |
atgcatcctttgttaattccttttttaattctatcattaattaaataaaggcgggtcacttacttcctatgata |
318 |
Q |
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| T |
39943092 |
atgcatcctttgttaattccttttttaattctatcattaataaaataaaggcgggtcacttacttcctttgata |
39943019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 39943307 - 39943258
Alignment:
| Q |
30 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
79 |
Q |
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| T |
39943307 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
39943258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 28739641 - 28739690
Alignment:
| Q |
30 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
79 |
Q |
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| T |
28739641 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28739690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 28749583 - 28749632
Alignment:
| Q |
30 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
79 |
Q |
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| T |
28749583 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28749632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 28739754 - 28739860
Alignment:
| Q |
146 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
237 |
Q |
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||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28739754 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28739853 |
T |
|
| Q |
238 |
aatccaa |
244 |
Q |
| |
|
||||||| |
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|
| T |
28739854 |
aatccaa |
28739860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 28749696 - 28749802
Alignment:
| Q |
146 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
237 |
Q |
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|
||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28749696 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28749795 |
T |
|
| Q |
238 |
aatccaa |
244 |
Q |
| |
|
||||||| |
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|
| T |
28749796 |
aatccaa |
28749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 28753596 - 28753645
Alignment:
| Q |
30 |
ccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
79 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
28753596 |
ccaacccccacataggtagcagaaaaatcaaagtaaaacctgttatgtac |
28753645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 28753709 - 28753815
Alignment:
| Q |
146 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
237 |
Q |
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||||||||| |||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |
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| T |
28753709 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattaagaacatagaggtttcagtttcggtcagcttttatattgtgtagtttat |
28753808 |
T |
|
| Q |
238 |
aatccaa |
244 |
Q |
| |
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||||||| |
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|
| T |
28753809 |
aatccaa |
28753815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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