View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_138 (Length: 318)
Name: NF1139_low_138
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_138 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 10891482 - 10891701
Alignment:
| Q |
95 |
atttgccatgtctactgcaacgggtatcggtacgtttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgac |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10891482 |
atttgccttgtctactgcaacgggtatcggtacgtttgtttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcaattcttgag |
10891581 |
T |
|
| Q |
195 |
actcagtagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattccta |
294 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||| ||||||||| | |
|
|
| T |
10891582 |
actcgatagcattccgtctttaactgcatttccaagggaaggtctacccacatctttgaaggcactttgtatttgtaattgcaagaatttatcattcatg |
10891681 |
T |
|
| Q |
295 |
cctccggaaacgtggagcaa |
314 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
10891682 |
ccttcagaaacgtggagcaa |
10891701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 95 - 318
Target Start/End: Complemental strand, 11146747 - 11146524
Alignment:
| Q |
95 |
atttgccatgtctactgcaacgggtatcggtacgtttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgac |
194 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146747 |
atttgccttgtctactgcaatcggtatcggtatatttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgag |
11146648 |
T |
|
| Q |
195 |
actcagtagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattccta |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| |||||||||||||| | |
|
|
| T |
11146647 |
actcagtagaattccgtctttaactgcatttccaagggaaggtctacccacttctttgcaggaacttcttatttatagttgcgagaagttatcattcatg |
11146548 |
T |
|
| Q |
295 |
cctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11146547 |
cctccggaaacgtggagcaattac |
11146524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 95 - 318
Target Start/End: Complemental strand, 11157913 - 11157690
Alignment:
| Q |
95 |
atttgccatgtctactgcaacgggtatcggtacgtttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgac |
194 |
Q |
| |
|
||||||| ||||| |||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157913 |
atttgccttgtcttctgcaatcggtatcagtatgtttctttgatacaatgttctcccttccccaaatgattttgagcagcacatgtcttcgattcttgaa |
11157814 |
T |
|
| Q |
195 |
actcagtagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattccta |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| |||||||||||||| | |
|
|
| T |
11157813 |
actcgatagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgcaggaacttcttatttataattgcgagaagttatcattcatg |
11157714 |
T |
|
| Q |
295 |
cctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11157713 |
cctccggaaacgtggagcaattac |
11157690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 318
Target Start/End: Original strand, 8863466 - 8863685
Alignment:
| Q |
99 |
gccatgtctactgcaacgggtatcggtacgtttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgacactc |
198 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8863466 |
gccatgtctactgcaatgggtaacactacgtttttttgatacaatattctctcttcccaaaatgattttgagcagcacttgtcttaaattcttgacactc |
8863565 |
T |
|
| Q |
199 |
agtagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattcctacctc |
298 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||| ||||| |||||||| | |||| |
|
|
| T |
8863566 |
cacagtgttccgtctttaactgcatttccaagggaaggtgtacccacttctttgcaggcaattcatatttataattgtgagaagctatcattcatgcctc |
8863665 |
T |
|
| Q |
299 |
cggaaacgtggagcaattac |
318 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
8863666 |
cagaaacgtggagcaattac |
8863685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 100 - 318
Target Start/End: Complemental strand, 11128917 - 11128699
Alignment:
| Q |
100 |
ccatgtctactgcaacgggtatcggtacgtttctttgatacaatattctcccttccccaaatgattttgagcagcacatgtcttcgattcttgacactca |
199 |
Q |
| |
|
||||||||||||||| | ||| | | ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
11128917 |
ccatgtctactgcaatgtgtagccctgcgtttctttgatacaatattctctcttcccaaaatgattttgagcagcacttgtcttaaattcttgaaactcc |
11128818 |
T |
|
| Q |
200 |
gtagcattccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattcctacctcc |
299 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||| |||||||| ||||| |||||||||||||| | ||||| |
|
|
| T |
11128817 |
acagtgttccgtctttaactgtatttccaagggatggtctacccacttctttgcaggaactttgtatttataattgcgagaagttatcattcatgcctcc |
11128718 |
T |
|
| Q |
300 |
ggaaacgtggagcaattac |
318 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
11128717 |
ggaaacatggagcaattac |
11128699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 10530974 - 10531052
Alignment:
| Q |
235 |
ggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattcctacctccggaaacgtggagca |
313 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||| || |||| |||||||| ||||| | ||||| ||||||||||||| |
|
|
| T |
10530974 |
ggtctacccacttcattgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagca |
10531052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 9841214 - 9841254
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9841214 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
9841254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 10034359 - 10034399
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10034359 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
10034399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 10129281 - 10129321
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10129281 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
10129321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 10361514 - 10361474
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10361514 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
10361474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 10431754 - 10431714
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10431754 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
10431714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 10665822 - 10665862
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10665822 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
10665862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 11487312 - 11487425
Alignment:
| Q |
205 |
attccgtctttaactgcatttccaagggaaggtctacccacttctttgaaggcacttagtatttatgattgcaagaagttatcattcctacctccggaaa |
304 |
Q |
| |
|
||||||||| | ||||||||||| | ||| |||||||| ||||| ||| | ||||| || || || ||| |||| ||||||||||| ||||| |||| |
|
|
| T |
11487312 |
attccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttcatagttgtgagaatttatcattccttcctcctgaaa |
11487411 |
T |
|
| Q |
305 |
cgtggagcaattac |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11487412 |
cgtggagcaattac |
11487425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 55315 - 55275
Alignment:
| Q |
278 |
agaagttatcattcctacctccggaaacgtggagcaattac |
318 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
55315 |
agaatttatccttcctacctcctgaaacgtggagcaattac |
55275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University