View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_14 (Length: 579)
Name: NF1139_low_14
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 96 - 325
Target Start/End: Complemental strand, 27166720 - 27166491
Alignment:
| Q |
96 |
atactaagaatcaagagagataacagtggatccaaatgtcctttattttaattattatgatcgaaatacatagtagatagatccccagttgggatttggt |
195 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27166720 |
atactaaaaatcatgagagataacagtggatccaaatgtcctttattttaattattatgatcaaaatacatagtagatagatccccagttgggatttggt |
27166621 |
T |
|
| Q |
196 |
tacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaagccctgctagtttatc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27166620 |
tacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaagccctgctagtttatc |
27166521 |
T |
|
| Q |
296 |
ctgcaatgagcaaagtgaatatgacattag |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27166520 |
ctgcaatgagcaaagtgaatatgacattag |
27166491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 334 - 570
Target Start/End: Complemental strand, 27166457 - 27166221
Alignment:
| Q |
334 |
ttacaactaataaaatgttggatattatttttagtccccaaagtatttggtttatgttgaattagttcttatcgaattgtaaactcatatttaagaaatt |
433 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
27166457 |
ttacaactaataaaatgtttgatattagttttagtccccaaagtatttggtttatgttgaattagttcttatcaatttgtaaactcatatttaagaaatt |
27166358 |
T |
|
| Q |
434 |
aaaagcaaaagtttatattttgaatgaattttcaatttactttctcaaatatcatattcttctagttcctaaagtaagtggtgacttgagagtgtcaact |
533 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27166357 |
aaaaggaaaagtttatattttgaatgaattttcaatttactttctcaaatatcatattcttctagttcctaaagtaagtggtgacttgagagtgtcaact |
27166258 |
T |
|
| Q |
534 |
tagttgacgccattctgtcatataacgatgcctatgc |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27166257 |
tagttgacgccattctgtcatataacgatgcctatgc |
27166221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 96 - 325
Target Start/End: Complemental strand, 27221361 - 27221139
Alignment:
| Q |
96 |
atactaagaatcaagagagataacagtggatccaaatgtcctttattttaattat--tatgatcgaaatacatagtagatagatccccagttgggatttg |
193 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
27221361 |
atactaagaatcaagagatataacagtaaattcaaatgttctttattttaattttaatattatcgaaatacatagtagatagat---------ggatttg |
27221271 |
T |
|
| Q |
194 |
gttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaagccctgctagttta |
293 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221270 |
gttacagtcggagaaattaaatcatctcctttattctgttttggttatcaccacaaactaaatacttattcattcatcaagtgcaagccctgctagttta |
27221171 |
T |
|
| Q |
294 |
tcctgcaatgagcaaagtgaatatgacattag |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27221170 |
tcctgcaatgagcaaagtgaatatgacattag |
27221139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 159 - 286
Target Start/End: Complemental strand, 27135498 - 27135371
Alignment:
| Q |
159 |
aaatacatagtagatagatccccagttgggatttggttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatat |
258 |
Q |
| |
|
|||||||| ||| | ||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| || |||||| |||||| ||||| || |
|
|
| T |
27135498 |
aaatacatggtaaagagatccctagttgggatttggttacaatcggagaaattaagtcatctcctttattctgttgcggttattaccacataccaagtac |
27135399 |
T |
|
| Q |
259 |
ttattcattcatcaagtgcaagccctgc |
286 |
Q |
| |
|
|||||||||||| ||| |||||||||| |
|
|
| T |
27135398 |
ttattcattcattaagcacaagccctgc |
27135371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University