View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_141 (Length: 314)
Name: NF1139_low_141
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 39026931 - 39027216
Alignment:
| Q |
3 |
tgtgcttcatagctaacatgtaatattgcaatttataaaaatacaaaagaattttcaaatgaattaacctaggttaaaattagtgttccaaagggttatc |
102 |
Q |
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| T |
39026931 |
tgtgcttcatagctaacatgtaatattgcaatttataaaaatacaaaagaattttcaaatgaattaacctaggttaaaattagtgttccaaagggttatc |
39027030 |
T |
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| Q |
103 |
attattataagggcatgtcactaaagagaaggtcacaagggcacgtggtggctgattcccactagctattaaatccactggcgactttccagttacaccg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027031 |
attattataagggcatgtcactaaagagaaggtcacaagggcacgtggtggctgattcccactagctattaaatccactggcgactttccagttacaccg |
39027130 |
T |
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| Q |
203 |
ttgagtccctcttcccagctgttcatagctgtccattccttctccattcccatgtgaccctactgcacacaagataccctttaaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027131 |
ttgagtccctcttcccagctgttcatagctgtccattccttctccattcccatgtgaccctactgcacacaagataccctttaaca |
39027216 |
T |
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