View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_144 (Length: 312)
Name: NF1139_low_144
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_144 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 3376551 - 3376768
Alignment:
| Q |
11 |
aaagaagaaaaggggtcgccctagaaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgct |
110 |
Q |
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| T |
3376551 |
aaagaagaaaaggggtcgccctagaaagtacagaccagacgggtctttaagcttggcgatacctcccaagccaaaatctagctccattggcgaagctgct |
3376650 |
T |
|
| Q |
111 |
aagttcgagttggagaatccaggtagctaagaaattctctttctttttgatcttgtgcatttcttgattgaatgcttgtgaagaagtatcaagaaagaat |
210 |
Q |
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| T |
3376651 |
aagttcgagttggagaatccaggtagccaagaaattctctttctttttgatcttgtgcatttcttgattgaatgcttgtgaaggagtatcaagaaagaat |
3376750 |
T |
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| Q |
211 |
agtgcattttgttgttcg |
228 |
Q |
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| T |
3376751 |
agtgcattttgttgttcg |
3376768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 3401615 - 3401741
Alignment:
| Q |
11 |
aaagaagaaaaggggtcgccctagaaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgct |
110 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3401615 |
aaagaagaaaaggggccgccctagaaagtacagaccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcggcgaagctgct |
3401714 |
T |
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| Q |
111 |
aagttcgagttggagaatccaggtagc |
137 |
Q |
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| T |
3401715 |
aagttcgagttggagaatccaggtagc |
3401741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 3367971 - 3368142
Alignment:
| Q |
35 |
aaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgctaagttcgagttggagaatccaggt |
134 |
Q |
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| T |
3367971 |
aaagtacaaaccagacaggtctttgaactcggtgatgcctccgaagccaacatctagctccattagtaaagctggcaaaagcacgttggagaatacaggt |
3368070 |
T |
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| Q |
135 |
agctaagaaattctctttctttttgatcttgtgcatttcttgattga-atgcttgtgaagaagtatcaagaa |
205 |
Q |
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| T |
3368071 |
aaccaagaaattctctttctttgtgatcatgtacgtgtcttgattgagatgcttgtgaaggagtatcaagaa |
3368142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 3371995 - 3371875
Alignment:
| Q |
78 |
aagccaacatctagctccatcagcgaagctgctaagttcgagttggagaatccaggtagctaagaaattctctttctttttgatcttgtgcatttcttga |
177 |
Q |
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| T |
3371995 |
aagccaacatctagctccattggcaaatctgccaaatttgagttggagaaaccaggtaactaagaaactctctttgtc----atcatgtgcgtttcttga |
3371900 |
T |
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| Q |
178 |
ttgaatgcttgtgaagaagtatcaa |
202 |
Q |
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||||||| ||||| || |||||||| |
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| T |
3371899 |
ttgaatggttgtgcagtagtatcaa |
3371875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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