View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_145 (Length: 312)
Name: NF1139_low_145
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_145 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 29421459 - 29421328
Alignment:
| Q |
29 |
tatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaaggaaatcaagacagcttcaaacagctagccatcaacaca |
128 |
Q |
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| T |
29421459 |
tatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaagggaaccaagacagcttcaaacagctagccatcaacaca |
29421360 |
T |
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| Q |
129 |
aaaaattcaagtttcaacaaatgcataaaagg |
160 |
Q |
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| T |
29421359 |
aaaaattcaagtttcaacaaatgcataaaagg |
29421328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 29457327 - 29457189
Alignment:
| Q |
87 |
aaaggaaatcaagacagcttcaaacagctagccatcaacacaaaaaattcaagtttcaacaaatgcataaaaggtgttggtcgttgtagataatatcatt |
186 |
Q |
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| T |
29457327 |
aaagggaatcaagacatgttccaacagctagccatcagcacaaaagatccaagtttcaaataatgcataaaaggtgttggtcattgtagataatatcatt |
29457228 |
T |
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| Q |
187 |
atcttaggagttctcttttattaagaatttgaattatag |
225 |
Q |
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| T |
29457227 |
atcttaggagttcacttttattaagaatttgaattatag |
29457189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 29419015 - 29418947
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatag |
225 |
Q |
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| T |
29419015 |
aaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatag |
29418947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 29457467 - 29457415
Alignment:
| Q |
37 |
atagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaa |
89 |
Q |
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| T |
29457467 |
atagaggaaaaagtattggcaaagtcgtaagaagttaagtttccaatttaaaa |
29457415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 24337752 - 24337684
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatag |
225 |
Q |
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| T |
24337752 |
aaggtgttgctcattgtagattatataattatcttaagagttatctttaattagcaatttgaattatag |
24337684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 24412345 - 24412277
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatag |
225 |
Q |
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||||||||| || |||||||| |||| |||||| || ||||| ||||| |||| |||||||||||||| |
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| T |
24412345 |
aaggtgttgctcattgtagattatataattatcataagagttatctttaattagcaatttgaattatag |
24412277 |
T |
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