View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_146 (Length: 310)
Name: NF1139_low_146
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_146 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 32662281 - 32662050
Alignment:
| Q |
35 |
tttttcttgatctccctctctacctctaacaattggattattcttcatctggtctactcttcacaatcttgcttttatcagtctaagatgagattctacc |
134 |
Q |
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| T |
32662281 |
tttttcttgatctccctctctacctccaactattggatcattcttcatctggtctactcttcaaaatcttgcttttatcagtctaagatgagattctacc |
32662182 |
T |
|
| Q |
135 |
ctgattctctcttcaatgaatatttttataaccctttctcagttttgtggtataactcatcaaagtctttcttgcttcatttttcgtttggataaaaagt |
234 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
32662181 |
ctgattctctcttcaatgaacatttttataaccctttctcagttttgtggtataactcatcatagactttcttgcttcatttttcgtttggataaaaagt |
32662082 |
T |
|
| Q |
235 |
acgctgaatgacctgtttgcagtgtattgctt |
266 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
32662081 |
acgctgaatgacctgtttgcactgtattgctt |
32662050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 32586824 - 32586614
Alignment:
| Q |
56 |
acctctaacaattggattattcttcatctggtctactcttcacaatcttgcttttatcagtctaagatgagattctaccctgattctctcttcaatgaat |
155 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32586824 |
acctctaactattggattattcttcatctggtctactcttcacaatcttgcttttatcagtctaagatgagattctaccctgattctctcttcaatgaac |
32586725 |
T |
|
| Q |
156 |
atttttataaccctttctcagttttgtggtataactcatcaaagtctttcttgcttcatttttcgtttggataaaaagtacgctgaatgacctgtttgca |
255 |
Q |
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| T |
32586724 |
atttttataaccctttctcagttttgtggtataactcatcaaagtctttcttgcttcatttttcgtttggataaaaagtacgctgaatgacctgtttgca |
32586625 |
T |
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| Q |
256 |
gtgtattgctt |
266 |
Q |
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|||||||||| |
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| T |
32586624 |
ctgtattgctt |
32586614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 32636600 - 32636369
Alignment:
| Q |
35 |
tttttcttgatctccctctctacctctaacaattggattattcttcatctggtctactcttcacaatcttgcttttatcagtctaagatgagattctacc |
134 |
Q |
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|
|||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32636600 |
tttttcctgatctccctctctacctccaactattggatcattcttcatctggtctactcttcaaaatcttgcttttatcagtctaagatgagattctacc |
32636501 |
T |
|
| Q |
135 |
ctgattctctcttcaatgaatatttttataaccctttctcagttttgtggtataactcatcaaagtctttcttgcttcatttttcgtttggataaaaagt |
234 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
32636500 |
ctgattctctcttcaatgaacatttttataaccctttctcagttttgtggtatcactcatcaaagaatttcttgcttcatgtttcgtttggaaaaaaagt |
32636401 |
T |
|
| Q |
235 |
acgctgaatgacctgtttgcagtgtattgctt |
266 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
32636400 |
acgctgaatgacctgtttgcactgtattgctt |
32636369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 301
Target Start/End: Complemental strand, 32586506 - 32586476
Alignment:
| Q |
271 |
taatgatgtaattaatgttggatatgatatt |
301 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32586506 |
taatgatgtaattaatgttggatatgatatt |
32586476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 301
Target Start/End: Complemental strand, 32636260 - 32636230
Alignment:
| Q |
271 |
taatgatgtaattaatgttggatatgatatt |
301 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
32636260 |
taatgatgtaattaatgttggatatgatatt |
32636230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 301
Target Start/End: Complemental strand, 32661942 - 32661912
Alignment:
| Q |
271 |
taatgatgtaattaatgttggatatgatatt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
32661942 |
taatgatgtaattaatgttggatatgatatt |
32661912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 41142204 - 41142089
Alignment:
| Q |
147 |
tcaatgaatatttttataaccctttctcagttttgtggtataactcatcaaagtctttcttgcttcatttttcgtttggataaaaagtacgctgaatgac |
246 |
Q |
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|||||||| |||||||||| ||||||| | ||||||||||| |||||||||| |||||||| ||||| ||| ||||||||||| |||| ||||| |||| |
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| T |
41142204 |
tcaatgaacatttttataatcctttcttaattttgtggtatcactcatcaaatactttcttgtttcatcttttgtttggataaatagtaagctgagtgac |
41142105 |
T |
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| Q |
247 |
ctgtttgcagtgtatt |
262 |
Q |
| |
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|||||||| |||||| |
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| T |
41142104 |
atgtttgcactgtatt |
41142089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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