View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_151 (Length: 302)
Name: NF1139_low_151
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_151 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 39026601 - 39026878
Alignment:
| Q |
29 |
aattctgttttcatatcttaattttagaaactaaactagatat----atatatgcttctcattttgcttcctataaataaacttataaatattttcttta |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026601 |
aattctattttcatatcttaattttagaaactaaactagatatatatatatatgcttctcattttgcttcctataaataaacttataaatattttcttta |
39026700 |
T |
|
| Q |
125 |
accactctaactctacctaaattggttaactagactttgactctttatctctacctaacaacctatgaagcacgtatatggacatgacactggacacgat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39026701 |
accactctaactctacctaaattggttaactagactttgactcattatctctacctaacaacctatgaagcacgtatatggacatgacatcggacacgat |
39026800 |
T |
|
| Q |
225 |
gtaaatatagacacgtcgatacggctaataacttgagaaaatcacacattttagtataattataaatgttggtgttat |
302 |
Q |
| |
|
| ||||| | | |||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| |
|
|
| T |
39026801 |
gcaaatacatatacgtcgatgcagctaataacttgagaaaatcacatattttaatgtaattataaatgtcggtgttat |
39026878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 25948947 - 25948889
Alignment:
| Q |
241 |
cgatacggctaataacttgagaaaatcacacattttagtataattataaatgttggtgt |
299 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | || ||| ||||||||| ||||||||| |
|
|
| T |
25948947 |
cgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgt |
25948889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 7328757 - 7328704
Alignment:
| Q |
235 |
acacgtcgatacggctaataacttgagaaaatcacacattttagtataattata |
288 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| | |||||| |||||||| |
|
|
| T |
7328757 |
acacgtcgatactgctaataatttgagaaaataacataatttagtgtaattata |
7328704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 3721099 - 3721139
Alignment:
| Q |
248 |
gctaataacttgagaaaatcacacattttagtataattata |
288 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
3721099 |
gctaataatttgagaaaatcacataatttagtataattata |
3721139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University