View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_152 (Length: 302)
Name: NF1139_low_152
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 28932505 - 28932248
Alignment:
| Q |
30 |
aatttattcgtaatagattatgagataccaagttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaaca |
129 |
Q |
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| T |
28932505 |
aatttattcacaatagattacgagataccaagttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaaca |
28932406 |
T |
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| Q |
130 |
aagaataacatatataaatagcaaagggtacagatgtgttattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaatt |
229 |
Q |
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| T |
28932405 |
aagaataacatatataaatagcaaagggtatagatgtgttattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaatt |
28932306 |
T |
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| Q |
230 |
cnnnnnnnttgttgtgtgtggacattaatcacaacctgaacttaatgtagtcaaccat |
287 |
Q |
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| T |
28932305 |
caaaaaaattgttgtgtgtggacattaatcacaacctgaacttaatgtagtcaaccat |
28932248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 10186852 - 10186791
Alignment:
| Q |
67 |
aaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaac |
128 |
Q |
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| T |
10186852 |
aaccaaaaattcaataacaaggcaatatagaagaatcaaaagctttggccacacaaacaaac |
10186791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 35121567 - 35121677
Alignment:
| Q |
41 |
aatagattatgagataccaagttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaacaaagaataacat |
140 |
Q |
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| T |
35121567 |
aatagattacgggataccaagttcccaaccaaaagttcaataacaaggcaacatagaagaatcaaaagctttagctactcaaacaaacaaagaagcacac |
35121666 |
T |
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| Q |
141 |
atataaatagc |
151 |
Q |
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| T |
35121667 |
aaataaatagc |
35121677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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