View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_154 (Length: 298)
Name: NF1139_low_154
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_154 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1580920 - 1581121
Alignment:
| Q |
1 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580920 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
1581019 |
T |
|
| Q |
101 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581020 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
1581119 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
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|| |
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| T |
1581120 |
ac |
1581121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1603895 - 1603694
Alignment:
| Q |
1 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603895 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
1603796 |
T |
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| Q |
101 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
200 |
Q |
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| T |
1603795 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
1603696 |
T |
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| Q |
201 |
ac |
202 |
Q |
| |
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|| |
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| T |
1603695 |
ac |
1603694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 1587507 - 1587579
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtgg |
187 |
Q |
| |
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||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587507 |
taaacaggatggtttagaagtgactgtgttggacccttcttttagagagttcacaatgtctttgaggaagtgg |
1587579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 1590716 - 1590654
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtcttt |
177 |
Q |
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| T |
1590716 |
taaaccggttggtttagaagtgattgtgttggacccttcttttagagagttcagaatgtcttt |
1590654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 19270271 - 19270206
Alignment:
| Q |
122 |
gttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtgg |
187 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19270271 |
gttggtttagaagtgattgtgttggacccttcttttagagagttcacaatgtcgttgaggaagtgg |
19270206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 39615951 - 39615893
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgt |
173 |
Q |
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||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39615951 |
taaaccggttggtttagaagtgattgtgttggacccttattttagaagcttcacaatgt |
39615893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 39616044 - 39616012
Alignment:
| Q |
13 |
ccaaagtcgtcttttaatgtcacttaaagaaga |
45 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
39616044 |
ccaaagtcgtcttttaatgccacttaaagaaga |
39616012 |
T |
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