View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_155 (Length: 295)
Name: NF1139_low_155
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_155 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 9462227 - 9462497
Alignment:
| Q |
25 |
catcagtttagtcatacttagttgtttgccacaaaccttccatcacaagcaaatgataatataaaaaagacagttcatgaaaaggaaaattgaagctact |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462227 |
catcagtttagtcatacttagttgtttgccacaaaccttccatcacaagcaaatgataatataaaaaagacagttcatgaaaaggaaaattgaagctact |
9462326 |
T |
|
| Q |
125 |
ataccttaaactgcgataaaagaccttgagccattgccttcattcatgtggttattaataatgttttcttctgctttgtgattcttgagatcaatatctg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462327 |
ataccttaaactgcgataaaagaccttgagccattgccttcattcatgtggttattaataatgttttcttctgctttgtgattcttgagatcaatatctg |
9462426 |
T |
|
| Q |
225 |
gatgaattttcctctttagcatcttcttcatcagctacaacattacaaatcagttaaacctaaccaattaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462427 |
gatgaattttcctctttagcatcttcttcatcagctacaacattacaaatcagttaaacctaaccaattaa |
9462497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University