View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_156 (Length: 294)

Name: NF1139_low_156
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_156
NF1139_low_156
[»] chr3 (3 HSPs)
chr3 (33-203)||(20519405-20519578)
chr3 (72-207)||(54437811-54437946)
chr3 (72-204)||(39341204-39341336)
[»] chr8 (6 HSPs)
chr8 (108-204)||(6630320-6630416)
chr8 (124-204)||(6803880-6803960)
chr8 (121-204)||(32166739-32166822)
chr8 (124-194)||(35574589-35574658)
chr8 (55-140)||(34695817-34695902)
chr8 (151-204)||(35574747-35574800)
[»] chr5 (4 HSPs)
chr5 (66-204)||(2243255-2243392)
chr5 (72-182)||(17736714-17736824)
chr5 (108-204)||(7215406-7215502)
chr5 (125-181)||(40483739-40483795)
[»] chr2 (6 HSPs)
chr2 (55-193)||(16576236-16576374)
chr2 (72-202)||(9050065-9050195)
chr2 (55-204)||(38576876-38577024)
chr2 (102-191)||(17606579-17606668)
chr2 (121-181)||(38576738-38576798)
chr2 (44-194)||(16863435-16863583)
[»] chr7 (1 HSPs)
chr7 (162-204)||(7463777-7463819)
[»] chr1 (2 HSPs)
chr1 (123-202)||(7104321-7104400)
chr1 (115-194)||(38839609-38839688)
[»] chr6 (1 HSPs)
chr6 (116-194)||(32047039-32047117)
[»] chr4 (1 HSPs)
chr4 (72-204)||(25062495-25062627)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 20519578 - 20519405
Alignment:
Q  33 ttattcttatcaaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataa-----aactttttcattttcttca 127  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||     |||||||||||||||||||    
T  20519578 ttattcttataaaaaattccttttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattttcttca 20519479  T
Q  128 ttcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattc 203  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||| ||||  ||||||||||||||| ||||||||    
T  20519478 ttcaacgtgtgatatccatctttttcgttccaaaattgaatcatatttgt--ttacgagtaaattacccccaattc 20519405  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 54437811 - 54437946
Alignment:
Q  72 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 171  Q
    |||||||||||||||||||||||| | ||||  || |||||| ||||| ||| ||||| |||  ||| | ||| |||| ||| ||  |||||| ||||||    
T  54437811 cttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatcat 54437910  T
Q  172 acttgtcattacgagtaaattactcccaattcaaca 207  Q
    | || ||||||   ||||||||| || |||||||||    
T  54437911 atttatcattagaggtaaattacccctaattcaaca 54437946  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 39341204 - 39341336
Alignment:
Q  72 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 171  Q
    ||||| || |||||||||||| || | || | ||| |||||||||||| | ||||||||||| || ||| ||| | | |||||||| ||||| ||||| |    
T  39341204 cttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatctt 39341303  T
Q  172 acttgtcattacgagtaaattactcccaattca 204  Q
    | || ||||||   ||||||||| || ||||||    
T  39341304 atttatcattagaggtaaattacccctaattca 39341336  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 6630416 - 6630320
Alignment:
Q  108 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    |||||||||||| || |||||||||| |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | ||||||||||| |||||||    
T  6630416 aaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattca 6630320  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 6803960 - 6803880
Alignment:
Q  124 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    |||||||| | |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | |||||||||||||||||||    
T  6803960 ttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaattca 6803880  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 32166822 - 32166739
Alignment:
Q  121 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    ||||||||| ||| |||||| | | |||  ||||||||||||||||||| ||||||||||||   ||||||||| |||||||||    
T  32166822 ttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattca 32166739  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 35574658 - 35574589
Alignment:
Q  124 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 194  Q
    |||||||||| ||| || ||| |||| |||||||||||||||||||||| | ||||| | |||||||||||    
T  35574658 ttcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata-tcgtcataaggagtaaattac 35574589  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 34695817 - 34695902
Alignment:
Q  55 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgat 140  Q
    |||||||||||||| | |||||||||||||| ||||||  | | |||||||| ||| || ||||  | ||||||||||| ||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgat 34695902  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 35574800 - 35574747
Alignment:
Q  151 ttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    |||||||||||||||||||||| |||||||||   ||||||||| | |||||||    
T  35574800 ttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattca 35574747  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 2243392 - 2243255
Alignment:
Q  66 tttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcg 165  Q
    ||||| |||||||| |||||||||||| || | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||||||||||| | |||||    
T  2243392 tttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcg 2243293  T
Q  166 aatcatacttgtcattacgagtaaattactcccaattca 204  Q
    |||  ||||||||||||   ||||||||| |||||||||    
T  2243292 aattttacttgtcattagaggtaaattac-cccaattca 2243255  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 17736824 - 17736714
Alignment:
Q  72 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 171  Q
    ||||||| || |||||||||| || | || | ||| |||||| ||||| ||||||| ||||| |||||| ||  |||||||||||| | ||||||||| |    
T  17736824 cttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgt 17736725  T
Q  172 acttgtcatta 182  Q
    |||||||||||    
T  17736724 acttgtcatta 17736714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 7215502 - 7215406
Alignment:
Q  108 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    |||||||||||| ||||||||||||| |||||| | | |||  ||||||||| || || |||||| |||| ||||   |||||||| || |||||||    
T  7215502 aaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattca 7215406  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 40483739 - 40483795
Alignment:
Q  125 tcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 181  Q
    ||||||||| |||||| | | |||  ||||||||||||||||||||||||| |||||    
T  40483739 tcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 16576236 - 16576374
Alignment:
Q  55 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 154  Q
    ||||||||| |||| | |||||||||| ||||||||||  | | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||  ||||    
T  16576236 ttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 16576335  T
Q  155 ttccaaaatcgaatcatacttgtcattacgagtaaatta 193  Q
    ||||| ||||||||||||||| |||||| | ||||||||    
T  16576336 ttccagaatcgaatcatacttatcattaggggtaaatta 16576374  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 9050195 - 9050065
Alignment:
Q  72 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 171  Q
    ||||| ||||||||||||||| |||| || |  |  |||||| ||||| | | ||||||||| | |||| ||| |||  |||||| ||||||||||||||    
T  9050195 cttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcat 9050096  T
Q  172 acttgtcattacgagtaaattactcccaatt 202  Q
     |||||||||| | ||||||||||| |||||    
T  9050095 gcttgtcattaagggtaaattactctcaatt 9050065  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 38577024 - 38576876
Alignment:
Q  55 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 154  Q
    |||||||||| ||| |  ||| |||||||||||||||| || |||| |  || ||| || ||||| |  |||||||||| |||||| ||| |||  ||||    
T  38577024 ttttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcg 38576925  T
Q  155 ttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    | ||| |||| ||||||| ||||||||| ||||||||||| |||||||||    
T  38576924 taccataatcaaatcatatttgtcattaggagtaaattac-cccaattca 38576876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 17606668 - 17606579
Alignment:
Q  102 attataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaat 191  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||| |||  ||||||| | |||| |||| |||||||||||  ||||||||    
T  17606668 attatcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcattgggagtaaat 17606579  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 38576798 - 38576738
Alignment:
Q  121 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 181  Q
    ||||||||||||| |||| | ||| | | |||| |||||||||||||||||||||||||||    
T  38576798 ttcttcattcaacatgtgttctccatatccttcattccaaaatcgaatcatacttgtcatt 38576738  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 16863435 - 16863583
Alignment:
Q  44 aaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatc 143  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||||| || | || |  || ||| || ||||| ||||| ||||||  |||||| |     
T  16863435 aaaaattccttttt-cttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatcta 16863532  T
Q  144 cgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 194  Q
    | ||| |||||||  | ||||||||| |||||||||||  | |||||||||    
T  16863533 catctccttcgttatagaatcgaatcctacttgtcattgagcgtaaattac 16863583  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 7463777 - 7463819
Alignment:
Q  162 atcgaatcatacttgtcattacgagtaaattactcccaattca 204  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  7463777 atcgaatcatacttgtcgttacgagtaaattactccgaattca 7463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 7104321 - 7104400
Alignment:
Q  123 cttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaatt 202  Q
    ||||||||||| ||| |||| | |||  |||||| || ||||||||||||||||||||||  ||||| |||| |||||||    
T  7104321 cttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 38839688 - 38839609
Alignment:
Q  115 ttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 194  Q
    ||||| |||||||||| || |||||| |   |||||||||||||| ||||||||| ||||| |||||| |||| ||||||    
T  38839688 ttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattac 38839609  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 32047039 - 32047117
Alignment:
Q  116 tcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 194  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||| ||| ||||| || |||||| ||  ||||||||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattac 32047117  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 25062495 - 25062627
Alignment:
Q  72 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 171  Q
    |||||||||| ||||| |||| || | || | ||| |||||| ||||| |||||| |||||| ||| || |   ||||||||  |||| ||| |||||||    
T  25062495 cttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcat 25062594  T
Q  172 acttgtcattacgagtaaattactcccaattca 204  Q
    ||||||||| |   |||||||||| ||||||||    
T  25062595 acttgtcatgagttgtaaattacttccaattca 25062627  T

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