View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_157 (Length: 292)
Name: NF1139_low_157
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_157 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 32934959 - 32935122
Alignment:
| Q |
70 |
caaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatgg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32934959 |
caaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatgg |
32935058 |
T |
|
| Q |
170 |
agaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttcatagg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32935059 |
agaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttcatagg |
32935122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 32911852 - 32912011
Alignment:
| Q |
70 |
caaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatgg |
169 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32911852 |
caaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagaaaacagctaaaaatgctccaaaagttgctgatgg |
32911951 |
T |
|
| Q |
170 |
agaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttca |
229 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
32911952 |
agttgatccatacattaagaagcttgtactcaagggaaaaccatatgatctctatgttca |
32912011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 32923852 - 32924015
Alignment:
| Q |
70 |
caaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatgg |
169 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
32923852 |
caaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagctaaaaatgctccaaaagttgctgatgg |
32923951 |
T |
|
| Q |
170 |
agaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttcatagg |
233 |
Q |
| |
|
||| |||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
32923952 |
agaagatccatacattaagaagcttgtactcaagggaaaaaaatatgatctctatgttcatagg |
32924015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 32942522 - 32942676
Alignment:
| Q |
75 |
acagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaaca-gctaaaaatgctccaaaagttgcagatggagag |
173 |
Q |
| |
|
||||||| |||| ||| |||||||| || |||||||||||| |||||| || |||| || |||| || ||||| |||||| |||| | | |||||| |
|
|
| T |
32942522 |
acagtggcagtagctgatcttggagggggatcagttcaaatggtatatgcagtctcaa-gagaacaagcaaaaaaagctccacaagtacctcagggagag |
32942620 |
T |
|
| Q |
174 |
gatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttca |
229 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||||| ||||| ||||||||||||| |
|
|
| T |
32942621 |
gatccatacataaaaaagattgtacttaaaggaaagaaatattacctctatgttca |
32942676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 32948734 - 32948795
Alignment:
| Q |
168 |
ggagaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttca |
229 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| || |||||| ||||| ||||||||||||| |
|
|
| T |
32948734 |
ggagaggatccatacataaaaaagattgtacttaaaggaaagaaatattacctctatgttca |
32948795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 11823991 - 11824155
Alignment:
| Q |
70 |
caaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatgg |
169 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| || ||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11823991 |
caaaaacagtgggagtaatggatcttggaggtggatcggttcaaatggcatatgcagtgtcaaggaatacagctaaaaatgctccaaaagttgctgatgg |
11824090 |
T |
|
| Q |
170 |
agaggatccatatataaagaagcttgtactcaaggg-aaagcaatatgacctctatgttcatagg |
233 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
11824091 |
agatgatccatatattaagaagcttgtactcaagggaaaaaaaatatgatctctatgttcatagg |
11824155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University