View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_162 (Length: 288)

Name: NF1139_low_162
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_162
NF1139_low_162
[»] chr3 (3 HSPs)
chr3 (21-197)||(20519405-20519584)
chr3 (66-201)||(54437811-54437946)
chr3 (66-198)||(39341204-39341336)
[»] chr8 (6 HSPs)
chr8 (102-198)||(6630320-6630416)
chr8 (118-198)||(6803880-6803960)
chr8 (115-198)||(32166739-32166822)
chr8 (118-188)||(35574589-35574658)
chr8 (49-134)||(34695817-34695902)
chr8 (145-198)||(35574747-35574800)
[»] chr5 (4 HSPs)
chr5 (60-198)||(2243255-2243392)
chr5 (66-176)||(17736714-17736824)
chr5 (102-198)||(7215406-7215502)
chr5 (119-175)||(40483739-40483795)
[»] chr2 (6 HSPs)
chr2 (49-187)||(16576236-16576374)
chr2 (66-196)||(9050065-9050195)
chr2 (49-198)||(38576876-38577024)
chr2 (96-185)||(17606579-17606668)
chr2 (115-175)||(38576738-38576798)
chr2 (38-188)||(16863435-16863583)
[»] chr7 (1 HSPs)
chr7 (156-198)||(7463777-7463819)
[»] chr1 (2 HSPs)
chr1 (117-196)||(7104321-7104400)
chr1 (109-188)||(38839609-38839688)
[»] chr6 (1 HSPs)
chr6 (110-188)||(32047039-32047117)
[»] chr4 (1 HSPs)
chr4 (66-198)||(25062495-25062627)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 20519584 - 20519405
Alignment:
Q  21 ggtaaattattcttatcaaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataa-----aactttttcattt 115  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||     |||||||||||||    
T  20519584 ggtaatttattcttataaaaaattccttttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattt 20519485  T
Q  116 tcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattc 197  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||  ||||||||||||||| ||||||||    
T  20519484 tcttcattcaacgtgtgatatccatctttttcgttccaaaattgaatcatatttgt--ttacgagtaaattacccccaattc 20519405  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 54437811 - 54437946
Alignment:
Q  66 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 165  Q
    |||||||||||||||||||||||| | ||||  || |||||| ||||| ||| ||||| |||  ||| | ||| |||| ||| ||  |||||| ||||||    
T  54437811 cttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatcat 54437910  T
Q  166 acttgtcattacgagtaaattactcccaattcaaca 201  Q
    | || ||||||   ||||||||| || |||||||||    
T  54437911 atttatcattagaggtaaattacccctaattcaaca 54437946  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 39341204 - 39341336
Alignment:
Q  66 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 165  Q
    ||||| || |||||||||||| || | || | ||| |||||||||||| | ||||||||||| || ||| ||| | | |||||||| ||||| ||||| |    
T  39341204 cttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatctt 39341303  T
Q  166 acttgtcattacgagtaaattactcccaattca 198  Q
    | || ||||||   ||||||||| || ||||||    
T  39341304 atttatcattagaggtaaattacccctaattca 39341336  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 6630416 - 6630320
Alignment:
Q  102 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    |||||||||||| || |||||||||| |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | ||||||||||| |||||||    
T  6630416 aaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattca 6630320  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 6803960 - 6803880
Alignment:
Q  118 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    |||||||| | |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | |||||||||||||||||||    
T  6803960 ttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaattca 6803880  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 32166822 - 32166739
Alignment:
Q  115 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    ||||||||| ||| |||||| | | |||  ||||||||||||||||||| ||||||||||||   ||||||||| |||||||||    
T  32166822 ttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattca 32166739  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 35574658 - 35574589
Alignment:
Q  118 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 188  Q
    |||||||||| ||| || ||| |||| |||||||||||||||||||||| | ||||| | |||||||||||    
T  35574658 ttcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata-tcgtcataaggagtaaattac 35574589  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 34695817 - 34695902
Alignment:
Q  49 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgat 134  Q
    |||||||||||||| | |||||||||||||| ||||||  | | |||||||| ||| || ||||  | ||||||||||| ||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgat 34695902  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 35574800 - 35574747
Alignment:
Q  145 ttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    |||||||||||||||||||||| |||||||||   ||||||||| | |||||||    
T  35574800 ttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattca 35574747  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 2243392 - 2243255
Alignment:
Q  60 tttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcg 159  Q
    ||||| |||||||| |||||||||||| || | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||||||||||| | |||||    
T  2243392 tttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcg 2243293  T
Q  160 aatcatacttgtcattacgagtaaattactcccaattca 198  Q
    |||  ||||||||||||   ||||||||| |||||||||    
T  2243292 aattttacttgtcattagaggtaaattac-cccaattca 2243255  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 17736824 - 17736714
Alignment:
Q  66 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 165  Q
    ||||||| || |||||||||| || | || | ||| |||||| ||||| ||||||| ||||| |||||| ||  |||||||||||| | ||||||||| |    
T  17736824 cttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgt 17736725  T
Q  166 acttgtcatta 176  Q
    |||||||||||    
T  17736724 acttgtcatta 17736714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 7215502 - 7215406
Alignment:
Q  102 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    |||||||||||| ||||||||||||| |||||| | | |||  ||||||||| || || |||||| |||| ||||   |||||||| || |||||||    
T  7215502 aaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattca 7215406  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 40483739 - 40483795
Alignment:
Q  119 tcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 175  Q
    ||||||||| |||||| | | |||  ||||||||||||||||||||||||| |||||    
T  40483739 tcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 16576236 - 16576374
Alignment:
Q  49 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 148  Q
    ||||||||| |||| | |||||||||| ||||||||||  | | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||  ||||    
T  16576236 ttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 16576335  T
Q  149 ttccaaaatcgaatcatacttgtcattacgagtaaatta 187  Q
    ||||| ||||||||||||||| |||||| | ||||||||    
T  16576336 ttccagaatcgaatcatacttatcattaggggtaaatta 16576374  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 9050195 - 9050065
Alignment:
Q  66 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 165  Q
    ||||| ||||||||||||||| |||| || |  |  |||||| ||||| | | ||||||||| | |||| ||| |||  |||||| ||||||||||||||    
T  9050195 cttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcat 9050096  T
Q  166 acttgtcattacgagtaaattactcccaatt 196  Q
     |||||||||| | ||||||||||| |||||    
T  9050095 gcttgtcattaagggtaaattactctcaatt 9050065  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 38577024 - 38576876
Alignment:
Q  49 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 148  Q
    |||||||||| ||| |  ||| |||||||||||||||| || |||| |  || ||| || ||||| |  |||||||||| |||||| ||| |||  ||||    
T  38577024 ttttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcg 38576925  T
Q  149 ttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    | ||| |||| ||||||| ||||||||| ||||||||||| |||||||||    
T  38576924 taccataatcaaatcatatttgtcattaggagtaaattac-cccaattca 38576876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 17606668 - 17606579
Alignment:
Q  96 attataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaat 185  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||| |||  ||||||| | |||| |||| |||||||||||  ||||||||    
T  17606668 attatcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcattgggagtaaat 17606579  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 38576798 - 38576738
Alignment:
Q  115 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 175  Q
    ||||||||||||| |||| | ||| | | |||| |||||||||||||||||||||||||||    
T  38576798 ttcttcattcaacatgtgttctccatatccttcattccaaaatcgaatcatacttgtcatt 38576738  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 16863435 - 16863583
Alignment:
Q  38 aaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatc 137  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||||| || | || |  || ||| || ||||| ||||| ||||||  |||||| |     
T  16863435 aaaaattccttttt-cttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatcta 16863532  T
Q  138 cgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 188  Q
    | ||| |||||||  | ||||||||| |||||||||||  | |||||||||    
T  16863533 catctccttcgttatagaatcgaatcctacttgtcattgagcgtaaattac 16863583  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 7463777 - 7463819
Alignment:
Q  156 atcgaatcatacttgtcattacgagtaaattactcccaattca 198  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  7463777 atcgaatcatacttgtcgttacgagtaaattactccgaattca 7463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 7104321 - 7104400
Alignment:
Q  117 cttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaatt 196  Q
    ||||||||||| ||| |||| | |||  |||||| || ||||||||||||||||||||||  ||||| |||| |||||||    
T  7104321 cttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 38839688 - 38839609
Alignment:
Q  109 ttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 188  Q
    ||||| |||||||||| || |||||| |   |||||||||||||| ||||||||| ||||| |||||| |||| ||||||    
T  38839688 ttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattac 38839609  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 32047039 - 32047117
Alignment:
Q  110 tcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 188  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||| ||| ||||| || |||||| ||  ||||||||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattac 32047117  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 25062495 - 25062627
Alignment:
Q  66 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 165  Q
    |||||||||| ||||| |||| || | || | ||| |||||| ||||| |||||| |||||| ||| || |   ||||||||  |||| ||| |||||||    
T  25062495 cttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcat 25062594  T
Q  166 acttgtcattacgagtaaattactcccaattca 198  Q
    ||||||||| |   |||||||||| ||||||||    
T  25062595 acttgtcatgagttgtaaattacttccaattca 25062627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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