View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_165 (Length: 287)

Name: NF1139_low_165
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_165
NF1139_low_165
[»] chr6 (2 HSPs)
chr6 (15-277)||(14986911-14987173)
chr6 (193-274)||(32445856-32445938)
[»] chr8 (5 HSPs)
chr8 (15-277)||(44551702-44551964)
chr8 (186-274)||(1604082-1604171)
chr8 (186-277)||(1661467-1661559)
chr8 (186-273)||(11144206-11144294)
chr8 (186-270)||(11143845-11143930)
[»] chr5 (2 HSPs)
chr5 (186-277)||(9260845-9260937)
chr5 (186-273)||(9260486-9260574)
[»] chr3 (2 HSPs)
chr3 (186-277)||(55039985-55040077)
chr3 (186-270)||(55040353-55040438)
[»] chr1 (8 HSPs)
chr1 (186-277)||(29393911-29394003)
chr1 (186-277)||(35163451-35163543)
chr1 (186-270)||(30403124-30403209)
chr1 (186-270)||(30409681-30409766)
chr1 (186-270)||(35163090-35163175)
chr1 (186-273)||(30402760-30402848)
chr1 (186-273)||(30409317-30409405)
chr1 (186-270)||(29394279-29394364)
[»] chr7 (2 HSPs)
chr7 (186-277)||(13948086-13948178)
chr7 (15-71)||(12487139-12487195)
[»] chr4 (1 HSPs)
chr4 (186-255)||(36892679-36892749)
[»] chr2 (1 HSPs)
chr2 (186-255)||(26450136-26450206)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 14987173 - 14986911
Alignment:
Q  15 aacctgtgaaatttccttcgttgctgataattgtttttgtttttagttatattcatgtttgtagtttactaaataatatcaatggatggtttgctaaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14987173 aacctgtgaaatttccttcgttgctgataattgtttttgtttttagttatattcatgtttgtagtttactaaataatatcaatggatggttttctaaata 14987074  T
Q  115 cttatatgtggcagaacttgaatcatcccttcatatttactaagttcatattttgcacaacaagttatgataaaatagtgatagttttggtggactttgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14987073 cttatatgtggcagaacttgaatcatcccttcatatttactaagttcatattttgcacaacaagttatgataaaatagtgatagttttggtggactttgt 14986974  T
Q  215 cgaggtgtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14986973 cgaggtgtttctgttttttgtcatgttatctcgaggggcagtaggctgtgtagtgcctctgtg 14986911  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 32445856 - 32445938
Alignment:
Q  193 tgatagttttggtggactttgtcgaggtg-tttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctct 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||| ||||||||||||||||||    
T  32445856 tgatagttttggtggactttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctct 32445938  T

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Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 44551702 - 44551964
Alignment:
Q  15 aacctgtgaaatttccttcgttgctgataattgtttttgtttttagttatattcatgtttgtagtttactaaataatatcaatggatggtttgctaaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44551702 aacctgtgaaatttccttcgttgctgataattgtttttgtttttagttatattcatgtttgtagtttactaaataatatcaatggatggtttactaaata 44551801  T
Q  115 cttatatgtggcagaacttgaatcatcccttcatatttactaagttcatattttgcacaacaagttatgataaaatagtgatagttttggtggactttgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551802 cttatatgtggcagaacttgaatcatcccttcatatttactaagttaatattttgcacaacaagttatgataaaatagtgatagttttggtggactttgt 44551901  T
Q  215 cgaggtgtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  44551902 cgaggtgtttctgttttttgtggtgttctctcgaggggcagcaggctgtgtagtgcctctgtg 44551964  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 1604171 - 1604082
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctct 274  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||    
T  1604171 aaaatagtgatagttttggtggactttgtcgatgtggtttctgttttttgtggtgtgttctcgaggggcagcaggatgtgtagtgcctct 1604082  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 1661559 - 1661467
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    |||||||||||||||||||||||||| |||||||| |||| |||||||| |  ||| |||||||||| ||| ||||||||| |||||||||||    
T  1661559 aaaatagtgatagttttggtggacttcgtcgaggtggtttatgttttttatggtgtgctctcgagggacagcaggctgtgtggtgcctctgtg 1661467  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 11144206 - 11144294
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctc 273  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||| ||||||| || ||| ||||||||| |||||||    
T  11144206 aaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 11144294  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 11143845 - 11143930
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||  ||| ||||||||| ||||||||||||||    
T  11143845 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgc 11143930  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 9260937 - 9260845
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggtg-tttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||    
T  9260937 aaaatagtgatagttttggtggattttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctgtg 9260845  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 9260574 - 9260486
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctc 273  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||||  ||| |||||||||| ||| |||||||||||||||||    
T  9260574 aaaatagcgatagttttggtggactttgtcgaggtggtttttgttttttgtagtgtgctctcgagggacagcaggctgtgtagtgcctc 9260486  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 55040077 - 55039985
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||| |||||||||| ||| ||||||||| |||||||||||    
T  55040077 aaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgagggacagcaggctgtgtggtgcctctgtg 55039985  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 55040438 - 55040353
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggtg-tttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    |||||||||||| |||||||  |||||||||||||| ||||||||||||||  |||  ||| ||||||||| ||||||||||||||    
T  55040438 aaaatagtgatatttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgc 55040353  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 29394003 - 29393911
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||  ||| ||| |||||||||||||||||    
T  29394003 aaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtgatgtgctctcgaggaacagcaggatgtgtagtgcctctgtg 29393911  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 35163451 - 35163543
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||  ||| |||||||||| ||  ||||||||| |||||||||||    
T  35163451 aaaatagtgatagttttggtggactttgtcgaagtggtttatgttttttgtggtgtgctctcgagggacaacaggctgtgtggtgcctctgtg 35163543  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 30403209 - 30403124
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||  ||| ||||||||| ||||||||||||||    
T  30403209 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgc 30403124  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 30409766 - 30409681
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||  ||| ||||||||| ||||||||||||||    
T  30409766 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgc 30409681  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 35163090 - 35163175
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||  ||| ||||||||| ||||||||||||||    
T  35163090 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgc 35163175  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 30402848 - 30402760
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctc 273  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||  ||| ||||||| || ||| ||||||||| |||||||    
T  30402848 aaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 30402760  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 30409405 - 30409317
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctc 273  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||  ||| ||||||| || ||| ||||||||| |||||||    
T  30409405 aaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 30409317  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 29394364 - 29394279
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgc 270  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||| ||  |||  ||| ||||||||| || |||||||||||    
T  29394364 aaaatagtgatagttttggtatactttgtcgaggtggtttctgtttttcgtggtgtgttcttgaggggcagcagactgtgtagtgc 29394279  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 13948086 - 13948178
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcagtaggctgtgtagtgcctctgtg 277  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||  |||  ||||||||| ||| ||||||||| |||||||||||    
T  13948086 aaaatagtgatagttttgggggactttgtcgaggtggtttatgttttttgtggtgtgttctcgagggacagcaggctgtgtggtgcctctgtg 13948178  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 12487139 - 12487195
Alignment:
Q  15 aacctgtgaaatttccttcgttgctgataattgtttttgtttttagttatattcatg 71  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  12487139 aacctgtgaaatttccttccttgctgataattgtttttgttttaagttatatccatg 12487195  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 36892679 - 36892749
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcag 255  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||   ||| | ||||||||||||    
T  36892679 aaaatagtgatagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcag 36892749  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 26450136 - 26450206
Alignment:
Q  186 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttctctcgaggggcag 255  Q
    ||||||||| |||||||||||||||||||||| || |||||||| |||||   ||| | ||||||||||||    
T  26450136 aaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcag 26450206  T

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