View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_166 (Length: 282)
Name: NF1139_low_166
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_166 |
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| [»] scaffold1450 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 8538717 - 8538951
Alignment:
| Q |
29 |
atcaaggacaagcaacatacacagcttagcaaaggcaaatgcacgcctgcgcgaagagcacacacacttttatatcaaagataattcaacaataaaatac |
128 |
Q |
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| T |
8538717 |
atcaaggacaagcgacatacaaggcttagcaaaggcaaatgcacgcccgcgcgaagagcgcacacacttttatatcaaagataattcaacaatgaaatac |
8538816 |
T |
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| Q |
129 |
atagttgatactgtggataagattctcagctttgtttgcattctcaacttttaaaagttagaatttttcaatattaaactttagtaggtatgacatgtcg |
228 |
Q |
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| T |
8538817 |
atagttgacaatgttgataagattctaagctttgtttgcattctcaacttttaaaagttagaatttttcaatattaaattttagtaggtatgacatgtcc |
8538916 |
T |
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| Q |
229 |
gcctgcggttattttatttggaaagcttagtattat |
264 |
Q |
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| T |
8538917 |
g-ctgcggttatttcatttggaaagcttagtattat |
8538951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 8568012 - 8568103
Alignment:
| Q |
108 |
gataattcaacaataaaatacatagttgatactgtggataagattctcagctttgtttgcattctcaacttttaaaagttagaatttttcaa |
199 |
Q |
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| T |
8568012 |
gataattcaacaacgaaatacatagttgacaatgtggataagattctaagctttgtttgctttctcaacttcgaagagctagaatttttcaa |
8568103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1450 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold1450
Description:
Target: scaffold1450; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 799 - 897
Alignment:
| Q |
80 |
cgaagagcacacacacttttatatcaaagataattcaacaataaaatacatagttgatactgtggataagattctcagctttgtttgcattctcaactt |
178 |
Q |
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| T |
799 |
cgaagagcgcacacacttttgtatcaaagataattcaacaatgaaatacatagttgataatgtggataagattctaagttttgtttactttctcaactt |
897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1450; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 945 - 1022
Alignment:
| Q |
187 |
tagaatttttcaatattaaactttagtaggtatgacatgtcggcctgcggttattttatttggaaagcttagtattat |
264 |
Q |
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| T |
945 |
tagaatttttcaatattgatttttagtagatatgaaatgtccacttgtggttaattcatatggaaagcttagtattat |
1022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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