View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_169 (Length: 278)
Name: NF1139_low_169
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_169 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 24491758 - 24491991
Alignment:
| Q |
30 |
tttggatcatggctcagctcatcatccctctttacctaatcaacaagcatatcatgcttcttaagttcgttataactaacttgctccttttgtattggct |
129 |
Q |
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| T |
24491758 |
tttggatcatggctcagctcat---ccctctttacctaatcaacaagcatatcatgcttcttaagttcgttataactaacttgctccttttgtattggct |
24491854 |
T |
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| Q |
130 |
atatatataaagccttgtgatgagtagatttaagagagttaagtggatgaattctgatcaaactttttagctagaattgagtgtgcacatatcaggagat |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24491855 |
atatatataaagccttgtgatgagtagatttaagggagttaagtggatgaattctgatcaaactttttagctagaattga--gtgcacatatcaggagac |
24491952 |
T |
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| Q |
230 |
gaaaattcaatttctgagagatggcattgctatattctt |
268 |
Q |
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||||||||||||| |||||||||||||||||| |||||| |
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| T |
24491953 |
gaaaattcaatttgtgagagatggcattgctagattctt |
24491991 |
T |
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