View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_low_173 (Length: 270)

Name: NF1139_low_173
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_low_173
NF1139_low_173
[»] chr2 (3 HSPs)
chr2 (41-268)||(39693870-39694099)
chr2 (150-214)||(2336696-2336762)
chr2 (161-207)||(2323694-2323740)
[»] chr4 (6 HSPs)
chr4 (160-214)||(29802613-29802667)
chr4 (108-206)||(31957580-31957681)
chr4 (161-211)||(23210827-23210876)
chr4 (152-207)||(30788297-30788354)
chr4 (160-201)||(2041166-2041207)
chr4 (181-210)||(50400019-50400048)
[»] chr7 (2 HSPs)
chr7 (160-207)||(23714892-23714939)
chr7 (163-214)||(7192787-7192838)
[»] chr1 (3 HSPs)
chr1 (161-206)||(7373363-7373408)
chr1 (161-194)||(8240396-8240429)
chr1 (163-215)||(47493819-47493871)
[»] chr8 (2 HSPs)
chr8 (168-214)||(11970314-11970360)
chr8 (160-214)||(40991825-40991879)
[»] chr3 (1 HSPs)
chr3 (160-214)||(41857496-41857550)
[»] chr6 (2 HSPs)
chr6 (178-215)||(10498844-10498881)
chr6 (161-214)||(29028162-29028215)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 268
Target Start/End: Complemental strand, 39694099 - 39693870
Alignment:
Q  41 ccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagaggatcata 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39694099 ccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagaggatcata 39694000  T
Q  141 cacactaggtcagagcaaccacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttatactctcacttataaataacgtgagat 240  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  39693999 cacactaggtcagagcaaccacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataacgtgagat 39693900  T
Q  241 ttttaact--cacttgccacgcattagggt 268  Q
    ||||||||  ||||||| ||||||||||||    
T  39693899 ttttaactcacacttgctacgcattagggt 39693870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 2336762 - 2336696
Alignment:
Q  150 tcagagcaaccaca--agtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  2336762 tcagagcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttat 2336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 2323740 - 2323694
Alignment:
Q  161 acaagtgagttggacaccatatcttaacccaaaatcttaagacattg 207  Q
    ||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  2323740 acaagtgagttggacaccacatcttaacctaaaaccttaaggcattg 2323694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 29802667 - 29802613
Alignment:
Q  160 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  29802667 cacaagtgagttggacaccatatcttaacacaaaaccttaaggcattgggtttat 29802613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 31957681 - 31957580
Alignment:
Q  108 tgttgagtcatgagtggagttcagaggatcatacacactaggtca-gagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagaca 204  Q
    ||||| |||||||| |||| |||| ||||||| | ||  ||| || ||||||||||  ||||||||||||||||| |||||||||||||| |||||| ||    
T  31957681 tgttgggtcatgaggggagctcaggggatcatcctcatcagggcaagagcaaccacgcaagtgagttggacaccacatcttaacccaaaaccttaaggca 31957582  T
Q  205 tt 206  Q
    ||    
T  31957581 tt 31957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 23210827 - 23210876
Alignment:
Q  161 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtt 211  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||||||    
T  23210827 acaagtgagttggacatcacatcttaa-cctaaatcttaagacattgagtt 23210876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 30788354 - 30788297
Alignment:
Q  152 agagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagacattg 207  Q
    |||||||||||  || ||||||| |||||| |||||||||||||| ||||||||||||    
T  30788354 agagcaaccactcaattgagttgaacaccacatcttaacccaaaaccttaagacattg 30788297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 2041207 - 2041166
Alignment:
Q  160 cacaagtgagttggacaccatatcttaacccaaaatcttaag 201  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  2041207 cacaagtgagttggacaccacatcttcacccaaaaccttaag 2041166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 50400048 - 50400019
Alignment:
Q  181 atcttaacccaaaatcttaagacattgagt 210  Q
    ||||||||||||||||||||||||||||||    
T  50400048 atcttaacccaaaatcttaagacattgagt 50400019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 23714892 - 23714939
Alignment:
Q  160 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattg 207  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  23714892 cacaagtgagttggacaccacatcttcacccaaaatcttaaggcattg 23714939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 7192838 - 7192787
Alignment:
Q  163 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    |||||||||||||| || ||||| || ||||| |||||||||||||||||||    
T  7192838 aagtgagttggacatcacatctttactcaaaaccttaagacattgagtttat 7192787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 7373408 - 7373363
Alignment:
Q  161 acaagtgagttggacaccatatcttaacccaaaatcttaagacatt 206  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7373408 acaagtgagttggacaccacatcttaaccaaaaattttaagacatt 7373363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 8240396 - 8240429
Alignment:
Q  161 acaagtgagttggacaccatatcttaacccaaaa 194  Q
    ||||||||||||||||||| ||||||||||||||    
T  8240396 acaagtgagttggacaccacatcttaacccaaaa 8240429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 47493871 - 47493819
Alignment:
Q  163 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttata 215  Q
    |||||||||||||   |||||||||| |||||| |||||| ||||||||||||    
T  47493871 aagtgagttggacgtaatatcttaactcaaaattttaagatattgagtttata 47493819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 11970360 - 11970314
Alignment:
Q  168 agttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    |||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  11970360 agttgggcaccacatcttaacccaaaatctaaaggcattgagtttat 11970314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 40991879 - 40991825
Alignment:
Q  160 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    |||| ||||||||||||||| |||||||||||||| ||| || ||||| ||||||    
T  40991879 cacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttat 40991825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 41857550 - 41857496
Alignment:
Q  160 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    ||||||||||||| ||| || ||||||||||||||  ||||| ||||||||||||    
T  41857550 cacaagtgagttgaacatcacatcttaacccaaaactttaagtcattgagtttat 41857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 10498844 - 10498881
Alignment:
Q  178 catatcttaacccaaaatcttaagacattgagtttata 215  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10498844 catatcttaacccaaaactttaagacattgagtttata 10498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 29028215 - 29028162
Alignment:
Q  161 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 214  Q
    |||||| |||||||||||| |||||||| |||||  ||| ||||||||||||||    
T  29028215 acaagtaagttggacaccacatcttaactcaaaacattaggacattgagtttat 29028162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University