View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_174 (Length: 265)
Name: NF1139_low_174
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_174 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 46901300 - 46901064
Alignment:
| Q |
30 |
cttgtaactctgatttgcaagaccaccaatacttaatcatccaaaacaaaatacatggaaaccaaacagcttcaattgttacaatcacatttcttatcta |
129 |
Q |
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| T |
46901300 |
cttgtaactctgatttgcaagaccaccaatacttaatcatccaaaacaaaatacatggaaaccaaacagcttcaattgttataatcacctttcttatcta |
46901201 |
T |
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| Q |
130 |
ttgtaattgttgttccaaatatgcaaaaaaat-aaattatcacacacaaataagcaagattttattttnnnnnnnnnnggtatgcgaccacaactgtggc |
228 |
Q |
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| T |
46901200 |
ttgtaattgttgttccaaatatgcaaaaaaataaaattatcacacacaaataagcaagattttattttaaaaaaaaaaggtatacgaccacaactgtggc |
46901101 |
T |
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| Q |
229 |
taagacgttaagatttttgacatctttgtcatcgcaa |
265 |
Q |
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| T |
46901100 |
taagacgttaaggtttttgacatctttgtcatcgcaa |
46901064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 46892106 - 46892019
Alignment:
| Q |
29 |
acttgtaactctgatttgcaagaccaccaatacttaatcatccaaaacaaaatacatggaaaccaaacagcttcaattgttacaatca |
116 |
Q |
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| T |
46892106 |
acttgtaactctgatttgcaagacaaccaatacttcaggagtcagaacaatatacatggaaaccaaacagtttcatttgttataatca |
46892019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 46874305 - 46874218
Alignment:
| Q |
29 |
acttgtaactctgatttgcaagaccaccaatacttaatcatccaaaacaaaatacatggaaaccaaacagcttcaattgttacaatca |
116 |
Q |
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| T |
46874305 |
acttgtaactctgatttgcaagacaaccaatacttcaggagtcagaacaatatacatggaaaccaaaaagttgcaattgttataatca |
46874218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 46865431 - 46865395
Alignment:
| Q |
80 |
atacatggaaaccaaacagcttcaattgttacaatca |
116 |
Q |
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| T |
46865431 |
atacatggaaaccaaacagtttaaattgttacaatca |
46865395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 27300767 - 27300680
Alignment:
| Q |
29 |
acttgtaactctgatttgcaagaccaccaatacttaatcatccaaaacaaaatacatggaaaccaaacagcttcaattgttacaatca |
116 |
Q |
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| T |
27300767 |
acttgtaactctaatttgcaagacagccaatacttcatgagtcagaacaagatacatgaaaaccaaatagtttcaattgttataatca |
27300680 |
T |
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