View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_175 (Length: 264)
Name: NF1139_low_175
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_175 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 232
Target Start/End: Complemental strand, 31604045 - 31603854
Alignment:
| Q |
41 |
attggttcgaataatggagcctagaaagaaaaataagaacttgctgaatagggatccggacggcgatttggttcacaggtttaaagtcgattgtattcaa |
140 |
Q |
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| T |
31604045 |
attggttcgaataatggagcctagaaagaaaaataagaacttgctgaatagggatccggacggcgatttggttcacaggtttaaagtggattgtattcaa |
31603946 |
T |
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| Q |
141 |
attaaacgtcatgactataaagaggaaatagcaatagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgat |
232 |
Q |
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| T |
31603945 |
attaaacgtcatgactataaagaggaaatagcaaaagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgat |
31603854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 31593791 - 31593602
Alignment:
| Q |
43 |
tggttcgaataatggagcctagaaagaaaaataagaacttgctgaatagggatccggacggcgatttggttcacaggtttaaagtcgattgtattcaaat |
142 |
Q |
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| T |
31593791 |
tggttcgaataatggagcctagaaagaaaaataagaacatgacgaatagggatccgaacggcgatttgattcataggtttaaagtggattgtattcaaat |
31593692 |
T |
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| Q |
143 |
taaacgtcatgactataaagaggaaatagcaatagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgat |
232 |
Q |
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| T |
31593691 |
taaacgtcatgattataaagaggaaatagcaagagatagtgttgaaatgataaatgttataaagtcacttgaaggttgttttgatttgat |
31593602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 31562908 - 31562718
Alignment:
| Q |
42 |
ttggttcgaataatggagcctagaaagaaaaataagaacttgctgaatagggatccggacggcgatttggttcacaggtttaaagtcgattgtattcaaa |
141 |
Q |
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| T |
31562908 |
ttggttcgaataatggagcctagaaagaataataagaacctgaggtatagggatccggacggtgatttgattcataggtttaaagtggagtgtatccaaa |
31562809 |
T |
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| Q |
142 |
ttaaacgtcatgactataaagaggaaatagcaatagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgat |
232 |
Q |
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| T |
31562808 |
ttaaacgtcatgattataaagaggaaatagtaagagatagtgttgaaatggtaaatgttataaggtcacttgaaggttgttttgatttgat |
31562718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 31578262 - 31578072
Alignment:
| Q |
42 |
ttggttcgaataatggagcctagaaagaaaaataagaacttgctgaatagggatccggacggcgatttggttcacaggtttaaagtcgattgtattcaaa |
141 |
Q |
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| T |
31578262 |
ttggttcgaataatggagcctcgaaagaaaaataggaacttgaccaacagggatccagacggcgacttgattcataggtttaaagtagattgtatcaaaa |
31578163 |
T |
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| Q |
142 |
ttaaacgtcatgactataaagaggaaatagcaatagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgat |
232 |
Q |
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| T |
31578162 |
ttaaacgtcatgattataaagaggaaatagcaagagatagtgttgaaatggtaaatgttataaggtcacttgaaggttgttttgatttgat |
31578072 |
T |
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