View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_182 (Length: 256)
Name: NF1139_low_182
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_182 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 2567167 - 2566921
Alignment:
| Q |
10 |
aataatattgatggatattgtaataaagttgtgattttgggatgtttaatctcaggtgcgtaagcataaaagaattaatagaatagaacatcctatgttc |
109 |
Q |
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| T |
2567167 |
aataatattgatggatatcgtaataaagttgtaattttgggatgtttgatctcaggttcgtaagcataaaagaattaatagaatagaacatcctatgttc |
2567068 |
T |
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| Q |
110 |
tacgattttttattttgttacgtgtttaacacctcatagccgatggattaatcaaagtgtcaagaatagcgctgcagagggtgcaacagaggatttggct |
209 |
Q |
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| T |
2567067 |
tacggttttttattctgttacgtgtttaacacctcatagccgatggattaatcaaagtgtcaagaatagcgctgcagagggtgcaacagaggatttggct |
2566968 |
T |
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| Q |
210 |
gccgagaatccaaatccgtaagttaaagtcttacattgaatggaaga |
256 |
Q |
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| T |
2566967 |
gccgagaatccaaatccgtaagttaaagtcttacattgaatggaaga |
2566921 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 49707535 - 49707492
Alignment:
| Q |
12 |
taatattgatggatattgtaataaagttgtgattttgggatgtt |
55 |
Q |
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| T |
49707535 |
taattttgatggatatagtaataaagtagtgattttgggatgtt |
49707492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 34548652 - 34548609
Alignment:
| Q |
12 |
taatattgatggatattgtaataaagttgtgattttgggatgtt |
55 |
Q |
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| T |
34548652 |
taattttgatggatatagtaataaagtagtgattttgggatgtt |
34548609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 45883513 - 45883470
Alignment:
| Q |
12 |
taatattgatggatattgtaataaagttgtgattttgggatgtt |
55 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||| |
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| T |
45883513 |
taattttgatggatatagtaataaagtagtgattttgggatgtt |
45883470 |
T |
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