View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_183 (Length: 255)
Name: NF1139_low_183
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_183 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6236331 - 6236552
Alignment:
| Q |
1 |
gtcaaggcaataatatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagt |
100 |
Q |
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| T |
6236331 |
gtcaaggcaata-tatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagt |
6236429 |
T |
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| Q |
101 |
taatagaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaaccca |
200 |
Q |
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| T |
6236430 |
taatagaaattgaaaacctaggtgataggtgaaaatctaattttttttttttt---atcaagcgaagaaattcaataaaactgaagagggccagaaccca |
6236526 |
T |
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| Q |
201 |
taacaaggtctacatcaggaagaaac |
226 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
6236527 |
taacaaagtctacatcaggaagaaac |
6236552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
35 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
134 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
135 |
atctaa |
140 |
Q |
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|||||| |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
35 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
134 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
135 |
atctaa |
140 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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