View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_190 (Length: 252)
Name: NF1139_low_190
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_190 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 30627270 - 30627068
Alignment:
| Q |
6 |
ctccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaa |
105 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30627270 |
ctccaatcatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaa |
30627171 |
T |
|
| Q |
106 |
ataaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttat |
205 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
30627170 |
ataaaataaaaacattaacagcaactctatcacatcacgtcaaactccattgtactttctagatctattcatgatgtctttcagtttggcaaaagtttat |
30627071 |
T |
|
| Q |
206 |
aca |
208 |
Q |
| |
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||| |
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| T |
30627070 |
aca |
30627068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 38459954 - 38460152
Alignment:
| Q |
14 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaataaaata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38459954 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttatacctgttgcaatataacacattgtttttgtcttttttaaataaaata |
38460053 |
T |
|
| Q |
114 |
aaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttatacatagtg |
213 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38460054 |
aaaacattaacaacaactctatcacatcacgtcaaa----atcgtactttctagatctattcatggtgtctttcagtttggcaaaagtttatacttagtg |
38460149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 38461057 - 38460859
Alignment:
| Q |
14 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaataaaata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38461057 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttatacctgttgcaatataacacattgtttttgtcttttttaaataaaata |
38460958 |
T |
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| Q |
114 |
aaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttatacatagtg |
213 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38460957 |
aaaacattaacaacaactctatcacatcacgtcaaa----atcatactttctagatctattcatggtgtctttcagtttggcaaaagtttatacttagtg |
38460862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 12422564 - 12422760
Alignment:
| Q |
6 |
ctccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12422564 |
ctccaatcatattatgccacttcattccatttcttttt----------agtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaa |
12422653 |
T |
|
| Q |
106 |
ataaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |
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| T |
12422654 |
ataaaataaaaacattaacagcaactctatcacatcacgtcaaa----atcgtactttctagatctatttatggtgtctttcagtttagcaaaagtttat |
12422749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 2065624 - 2065473
Alignment:
| Q |
7 |
tccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaa |
106 |
Q |
| |
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|||||| ||||| |||||| |||| |||||||| |||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
2065624 |
tccaatcatattttgccacctcatcccatttctctttcccttcaactagtaatcggttgtacctgttgcaaaataacacattgtttttgtcttttttaaa |
2065525 |
T |
|
| Q |
107 |
taaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgt |
158 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
2065524 |
taaaataaaaacattaacagcaactccatcacatctcgtcaaacaccatcgt |
2065473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 8718977 - 8719167
Alignment:
| Q |
6 |
ctccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8718977 |
ctccaatcatattatgccacttcattccatttattttt----------agtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaa |
8719066 |
T |
|
| Q |
106 |
ataaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttat |
205 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||| |
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| T |
8719067 |
ataaaataaaaacattaacaacaactctatcacatcacgtcaaa----atcgtactttctagatctatttatggtgtcttt--gtttagcaaaagtttat |
8719160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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