View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_193 (Length: 252)
Name: NF1139_low_193
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_193 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 37 - 252
Target Start/End: Complemental strand, 12276428 - 12276212
Alignment:
| Q |
37 |
aaattcataagtacaattgctagcaccaaaaagaaattcttcagcgttgtagctttgtaacaggacagtgctccattgccttcttctatctcaattgcta |
136 |
Q |
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| T |
12276428 |
aaattcataagtacaattgctagcaccaaaaagaaattcttcagcgttgtagctttgtaacaggacagtgctccattgccttcttctatctcaattgcta |
12276329 |
T |
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| Q |
137 |
gcac------ttatcgcnnnnnnnttgattttaagtttaattacattacctgaaaccaaattgctaaaaatattgacgcaagaaatacacaagtaagaac |
230 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12276328 |
gcacttaaaattatcgcaaaaaaattgattttaagttta-----attacctgaaaccaaattgctaaaaatattgacgcaagaaatacacaagtaagaac |
12276234 |
T |
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| Q |
231 |
caaagacaaattcatacaaact |
252 |
Q |
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|||||||||||||||||||||| |
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| T |
12276233 |
caaagacaaattcatacaaact |
12276212 |
T |
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