View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_196 (Length: 252)
Name: NF1139_low_196
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_196 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29789576 - 29789338
Alignment:
| Q |
1 |
ttgttatcattactccttttaagggatctgctttaaaagtatctcttttcttatgacactatctaattagtaaattgttcatatttgaaaagagctagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29789576 |
ttgttatcattactccttttaagggatctgctttaaaagtatctcttttcttatgacactatctaattagtaaattgttcatatttgaaaagagctagac |
29789477 |
T |
|
| Q |
101 |
aaaatgtcacaagttcccctgctattaagtcaagtaactcactttgtcaatgtattccnnnnnnnngatattatttcattaattttctttattctatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29789476 |
aaaatgtcacaagttcccctgctattaagtcaagtaactcactttgtcaatgtattccaaaaaaaagatattatttcattaattttctttattctatata |
29789377 |
T |
|
| Q |
201 |
tcatcacttactcaacatttatgttatcttttcttacca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29789376 |
tcatcacttactcaacatttatgttatcttttcttacca |
29789338 |
T |
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