View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_2 (Length: 1136)
Name: NF1139_low_2
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr2 (Bit Score: 965; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 965; E-Value: 0
Query Start/End: Original strand, 30 - 1136
Target Start/End: Original strand, 40457041 - 40458151
Alignment:
| Q |
30 |
agttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttgggtg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40457041 |
agttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttgggtg |
40457140 |
T |
|
| Q |
130 |
ccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttaggatacttcttg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40457141 |
ccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgcgaattcctttcttaggatacttcttg |
40457240 |
T |
|
| Q |
230 |
acagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttgaacgcttggga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40457241 |
acagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttgaacgcttggga |
40457340 |
T |
|
| Q |
330 |
gtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgttgagaattaacagtggtgttata |
429 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40457341 |
gtggagttgtagcaagaacacgaccgcggactccatccaagtgtgaatccaaaccagccagaaaaatataaacacgttgagaattaacagtggtgttata |
40457440 |
T |
|
| Q |
430 |
cttctcaacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttccaaaatatataatcacagaacca |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40457441 |
cttctcaacatctttagtgcactccatggtacaatttgcaatggcatcatactcttgccacaacctttttaattttccaaaatatataatcatagaacca |
40457540 |
T |
|
| Q |
530 |
ccattttgatgagtataatcta-cccacggtataattgatatgccctagatgcatcttggttgactgaatacgtctccttgatggtgtcccatatttcct |
628 |
Q |
| |
|
||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40457541 |
ccattttgatgagtagaaattatctcacggtataattgatatgccctagatgcatcttggttgactgaatacgtctccttgatggtgtcccatatttcct |
40457640 |
T |
|
| Q |
629 |
tcgccgtagccaaacgaataaagagtgatctgatgtctttggtcatagagtcaagaagccataacttaaccaaacaattttcatcctcccatgtttcata |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40457641 |
tcgccgtagccaaacgaataaagagtgatctgatgtctttggtcatagagtcaagaagccatgacttaaccaaacagttttcatcctcccatgtttcata |
40457740 |
T |
|
| Q |
729 |
ctcctcggatttctcatcttttggtgcagcctttgttccagagacataaccccaacgttttctgcctcagatcttgttttgggcgtttagcgaccactcg |
828 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40457741 |
ctcctcgaatttctcatcttttggtgcagcctttgttccagagacataaccccaacgttttctgcctcggatcttgttttgggcgtttagcgaccactcg |
40457840 |
T |
|
| Q |
829 |
acgtagttggtgccgtcaagtcgttcaggtgttagtgctgaagaaaa---ctgcagatggagagtagtcccagaagtcccagaatcagatttatctttac |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40457841 |
acgtagttggtgccgtcaagtcgttcaggtgttagtgcggaagaaaactcctgcagatggagagtagtcccagaagtcccataatcagatttatctttac |
40457940 |
T |
|
| Q |
926 |
t-ggatgctccatcagaaattactcaaagaaaccaaagtaaccgattcctatattagggatttcggtgtggctcgcgataccatatagaatagtttcaaa |
1024 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
40457941 |
tgggatgctccatcagaaattactcaatgaaaccaaagtaactgattcctatattagggatttcggtttggctc-tgataccatatagaatagtttcaaa |
40458039 |
T |
|
| Q |
1025 |
gagaaaattctgatatattattattcacagaggccataaacatatatacaacttctgttcctgatgtctctccttaataacaggaggccttaaaactaaa |
1124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40458040 |
gagaaaattctgatatattattattcacagagggcataaacatatatacagcttctgttcctaatgtctctccttaataacaggaggctttaaaactaaa |
40458139 |
T |
|
| Q |
1125 |
aattaaatcaca |
1136 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40458140 |
aattaaatcaca |
40458151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 1001 - 1136
Target Start/End: Original strand, 40453461 - 40453596
Alignment:
| Q |
1001 |
gataccatatagaatagtttcaaagagaaaattctgatatattattattcacagaggccataaacatatatacaacttctgttcctgatgtctctcctta |
1100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
40453461 |
gataccctatagaatagtttcaaagagaaaattctgatatattattattcacagagggcataaacatatatacagcttctgttcctaatgtctctcctta |
40453560 |
T |
|
| Q |
1101 |
ataacaggaggccttaaaactaaaaattaaatcaca |
1136 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
40453561 |
ataacatgaggctttaaaactaaaaattaaatcaca |
40453596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 40088882 - 40088836
Alignment:
| Q |
432 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
478 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
40088882 |
tctcaacatctttagtgcacaccatggtacaatcttcaatcgcatca |
40088836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 119 - 864
Target Start/End: Original strand, 56393175 - 56393921
Alignment:
| Q |
119 |
ccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttag |
218 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
56393175 |
ccttttggatgccaatctggatatccatggagtttaaaacatgcttccactacatgattatcaccattacagtgggtacacttacgaactcctttcttgg |
56393274 |
T |
|
| Q |
219 |
gatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttg |
318 |
Q |
| |
|
|||||||||| |||| | ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || | ||| |
|
|
| T |
56393275 |
gatacttcttcacagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattg |
56393374 |
T |
|
| Q |
319 |
aacgcttgggagtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgttgagaattaaca |
418 |
Q |
| |
|
||| ||||||| ||||| |||||||| | ||||| || ||||||||||| |||||||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
56393375 |
aacatttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgggaattaacc |
56393474 |
T |
|
| Q |
419 |
gtggtgttatacttctc-aacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttccaaaatatata |
517 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| | ||| || || |
|
|
| T |
56393475 |
atcttgttatacttctctaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagta |
56393574 |
T |
|
| Q |
518 |
atcacagaaccaccattttgatgagtataatctacccacggtataattgatatgccctagatgcatcttggttgactgaatacgtctccttgatggtgtc |
617 |
Q |
| |
|
|| ||||| ||||||||||| |||||| | |||||||| || ||||||||||| || |||||||||||||| || |||||||||||||| | || || |
|
|
| T |
56393575 |
ataacagatccaccattttgttgagtagagattacccacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctccttcacagtttc |
56393674 |
T |
|
| Q |
618 |
ccatatttccttcgccgtagccaaacgaataaagagtgatctgatgtctttggtcatagagtcaagaagccataacttaaccaaacaattttcatcctcc |
717 |
Q |
| |
|
||| |||||||| | ||||||||| ||||| ||||| |||||| | |||||||||||||| || |||||||| |||| ||||| || |||||||| ||| |
|
|
| T |
56393675 |
ccaaatttcctttgtcgtagccaagcgaatgaagagggatctggtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcc |
56393774 |
T |
|
| Q |
718 |
catgtttcatactcctcggatttctcatcttttggtgcagcctttgttccagagacataaccccaacgttttctgcctcagatcttgttttgggcgttta |
817 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||||||| || || | |
|
|
| T |
56393775 |
catgtttcatattcctcagatttctggtctattggtgtagcctttgttcaggtgacgtaaccccaacgttttctgcctctgatcttgttttgtgcattca |
56393874 |
T |
|
| Q |
818 |
gcgaccactcgacgtagttggtgccgtcaagtcgttcaggtgttagt |
864 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||| |||||| |
|
|
| T |
56393875 |
acgaccactcgacatagttgctgccgtcaagtcattcaggggttagt |
56393921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 119 - 866
Target Start/End: Original strand, 27517413 - 27518161
Alignment:
| Q |
119 |
ccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttag |
218 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
27517413 |
ccttttggatgccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattacagtgggtacactaacgaactcctttcttgg |
27517512 |
T |
|
| Q |
219 |
gatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttg |
318 |
Q |
| |
|
|||||||||| |||| | ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || | ||| |
|
|
| T |
27517513 |
gatacttcttcacagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattg |
27517612 |
T |
|
| Q |
319 |
aacgcttgggagtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgttgagaattaaca |
418 |
Q |
| |
|
||| ||||||| ||||| |||||||| | ||||| || ||||||||||| |||||||||| |||||| |||||| ||||| |||||| | |
|
|
| T |
27517613 |
aacatttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgtgaattagcc |
27517712 |
T |
|
| Q |
419 |
gtggtgttatacttctcaacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttccaaaatatataa |
518 |
Q |
| |
|
| |||||||||||||||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| | ||| || ||| |
|
|
| T |
27517713 |
atcttgttatacttctcaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagtaa |
27517812 |
T |
|
| Q |
519 |
tcacagaaccaccattttgatgagtataatctacc-cacggtataattgatatgccctagatgcatcttggttgactgaatacgtctccttgatggtgtc |
617 |
Q |
| |
|
| ||||| ||||||||||| |||||| | |||| |||| || ||||||||||| || |||||||||||||| ||||||||||||||||| | ||| || |
|
|
| T |
27517813 |
taacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttactgaatacgtctccttcacggtttc |
27517912 |
T |
|
| Q |
618 |
ccatatttccttcgccgtagccaaacgaataaagagtgatctgatgtctttggtcatagagtcaagaagccataacttaaccaaacaattttcatcctcc |
717 |
Q |
| |
|
||| |||||||| | ||||||||| ||||| ||||| ||||| | |||||||||||||| || |||||||| |||| ||||| || |||||||| ||| |
|
|
| T |
27517913 |
ccaaatttcctttgtcgtagccaagcgaatgaagagggatctagtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcc |
27518012 |
T |
|
| Q |
718 |
catgtttcatactcctcggatttctcatcttttggtgcagcctttgttccagagacataaccccaacgttttctgcctcagatcttgttttgggcgttta |
817 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||| ||||||||||| | ||| ||||||||| |||||||||||| |||||||||||| || || | |
|
|
| T |
27518013 |
catgtttcatactcctcagatttttagtcttttggtgtagcctttgttctggtgacgtaaccccaatgttttctgcctctgatcttgttttgtgcattca |
27518112 |
T |
|
| Q |
818 |
gcgaccactcgacgtagttggtgccgtcaagtcgttcaggtgttagtgc |
866 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||| |||||||| |
|
|
| T |
27518113 |
acgaccactcgacatagttgctgccgtcaagtcattcaggggttagtgc |
27518161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 1008 - 1136
Target Start/End: Complemental strand, 32204179 - 32204051
Alignment:
| Q |
1008 |
tatagaatagtttcaaagagaaaattctgatatattattattcacagaggccataaacatatatacaacttctgttcctgatgtctctccttaataacag |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32204179 |
tatagaatagtttcaaagagaaaattctgatatattattattcacagagggcataaacatatatacagcttctgttcctaatgtctctccttaataacag |
32204080 |
T |
|
| Q |
1108 |
gaggccttaaaactaaaaattaaatcaca |
1136 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
32204079 |
aaggctttaaaactaaaaattaaatcaca |
32204051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 4242442 - 4242396
Alignment:
| Q |
432 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
478 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
4242442 |
tctcaacatctttagtgcacaccatggtacaatcttcaatcgcatca |
4242396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 8017304 - 8017258
Alignment:
| Q |
432 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
478 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||| |||||| |
|
|
| T |
8017304 |
tctcaacatctttattgcacaccatggtacaatcttcaatcgcatca |
8017258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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