View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_203 (Length: 251)
Name: NF1139_low_203
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_203 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41417469 - 41417711
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417469 |
caattgcaataagtaaagataaaatgacacaccttatgagcaaatttgcaatacaccatataatctgacatgatataaattaaatacacaaatgttcaat |
41417568 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttcatgttatatatggtctatataacaactttgagaggaagaaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417569 |
gattaaccatttaacttcactagaaaaatcattcttacgatttcaccatataatttttcatgttatatatggtctatataacaactttgagaggaagaaa |
41417668 |
T |
|
| Q |
201 |
atgtggtaactttggaccatgtataatccttatttttcatctc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417669 |
atgtggtaactttggaccatgtataatccttatttttcatctc |
41417711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 36055764 - 36055920
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||||||||| || |||||||||| |||| ||| || || |||||||| |||||||| ||||| |
|
|
| T |
36055764 |
caattgtaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatgtaatctgatgcgacatgaattaaattcacaaatgctcaat |
36055863 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| | ||| |||||||| |||||| |
|
|
| T |
36055864 |
gattgaccatttaacttcacaagaaaagtcattctcatgacatcaccataaaatttt |
36055920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 22616651 - 22616496
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||||| | |||||||||||||||||||| ||| || |||||||||| |||| ||||| |
|
|
| T |
22616651 |
caattgcaataagtaaagatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtgacatggattaaataca-taatgctcaat |
22616553 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | | |||||||||||| |||||| |
|
|
| T |
22616552 |
gattggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt |
22616496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10237572 - 10237416
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| || ||| ||||| | |||||||| ||||| | ||||||||||||||| |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
10237572 |
caattggaataagtaaatatataatgaaataccttatggacaaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaat |
10237473 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| | | |||||||| ||| |||||| |
|
|
| T |
10237472 |
gattgaccatttaacttcactagaaaagtcattttcatgacttcacaatagaatttt |
10237416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 25653739 - 25653639
Alignment:
| Q |
4 |
ttgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgat |
103 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| ||| |||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
25653739 |
ttgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatacaatctgacgtgatatgaattaaatacacaaatactcaatgat |
25653640 |
T |
|
| Q |
104 |
t |
104 |
Q |
| |
|
| |
|
|
| T |
25653639 |
t |
25653639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 31878533 - 31878423
Alignment:
| Q |
9 |
ataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaacc |
108 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||| || ||||||||||||||| |||| ||| || ||||||||||||||||| | ||||||| || |
|
|
| T |
31878533 |
ataagtaaagatataatgacacaccttatagacaaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgcttaatgattgaca |
31878434 |
T |
|
| Q |
109 |
atttaacttca |
119 |
Q |
| |
|
||||||||||| |
|
|
| T |
31878433 |
atttaacttca |
31878423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 21320909 - 21320753
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| |||||| ||||| ||| ||||| |||||| || ||||||||||||||| ||| || || | |||||||||| |||| ||||| |
|
|
| T |
21320909 |
caattgtaataagtaaagatataatgatacatcttatatgcaaatatgcaatacaccatataatctgatgtggcattagttaaatacacgaatgctcaat |
21320810 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| | |||||||||||| | |||||||||| ||| ||||||||||| |||||| |
|
|
| T |
21320809 |
gattgatcatttaacttcatcaaaaaagtcatttttattacttcaccatagaatttt |
21320753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10053381 - 10053318
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataat |
64 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
10053381 |
caattgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacgatataat |
10053318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 12081158 - 12081220
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataat |
64 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
12081158 |
aattgcaataagtaaagatataaggacacaccttataagcaaatgtgtaatacaccatataat |
12081220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 33163673 - 33163512
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatata--atatgacatgatataaattaaatacacaaatgttca |
98 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||| |||| || ||||||||||||| || ||| || ||| |||||| ||||||||||| | |
|
|
| T |
33163673 |
caattgcaataagtaaagatataatggcacaccttatggataaatgtgcaatacaccatatataatctgatgtggcatagattaaacacacaaatgttta |
33163574 |
T |
|
| Q |
99 |
atgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttca |
160 |
Q |
| |
|
||||||| ||||||||| || |||| ||||| | | |||||||||||| ||||||||| |
|
|
| T |
33163573 |
atgattagacatttaactccaccgaaaaaatcattttcatgacttcaccatagaatttttca |
33163512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21266177 - 21266133
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaat |
45 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
21266177 |
caattgcaataagtaaagatataatgatacaccttatgagcaaat |
21266133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26411455 - 26411352
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| || ||| | || || || ||||||||||| | ||||||||||||||| |||| ||| || |||||||||| |||| |||||| |
|
|
| T |
26411455 |
caattgcaataagtaaatatatagtggcatactgtatgagcaaatgtacaatacaccatataatttgacgtgacatgtattaaatacataaatattcaat |
26411356 |
T |
|
| Q |
101 |
gatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
26411355 |
gatt |
26411352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 13380657 - 13380498
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||| | |||||| ||||||| | ||||| | |||| || |||||||||| || |||||| | ||| | ||||||||||||||| ||| | |
|
|
| T |
13380657 |
caattgcaataaataaagatataatgacatattttatgggtaaatgtgcaatacaccatgtagtatgacgttataaagattaaatacacaaatactcatt |
13380558 |
T |
|
| Q |
101 |
gattaaccat----ttaacttcaaaagaaaagtcattcttacgacttcaccatataattt |
156 |
Q |
| |
|
| | | ||| ||||||||| |||||||||||||| | |||||||||||| ||||| |
|
|
| T |
13380557 |
aagtgatcatagggttaacttcactagaaaagtcattctcatgacttcaccataaaattt |
13380498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27579186 - 27579118
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgac |
69 |
Q |
| |
|
|||||||||||| | |||||| |||||| ||| |||| |||||| || ||||||||||||||| |||| |
|
|
| T |
27579186 |
caattgcaataaataaagatataatgacgcactttataggcaaatatgcaatacaccatataatctgac |
27579118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41644030 - 41643872
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| ||||| || ||||||||||||||| |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
41644030 |
caattgcaataagtaaagatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaat |
41643931 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
|||| |||||||||||||| | |||||||||| | | |||||||||||| |||||||| |
|
|
| T |
41643930 |
gattgaccatttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttttc |
41643872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6177933 - 6177777
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| || ||| ||||||| |||||||| |||||| | ||||||||||||||| |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
6177933 |
caattggaataagtaaatatataatgacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaat |
6177834 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| | |||||| || || |||||| |
|
|
| T |
6177833 |
gattgaccatttaacttcaccagaaaagtcattctcatgacttcgccgtagaatttt |
6177777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 15651006 - 15650888
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||||| || ||||||||||||||| | || |||||| ||||||||||||||| || ||| |
|
|
| T |
15651006 |
caattgcaataagtaaagatataatgacacaccttatgggcaaatgtgaaatacaccatataatcttacgtgatatggattaaatacacaaatatttaat |
15650907 |
T |
|
| Q |
101 |
gattaaccatttaacttca |
119 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
15650906 |
gattgacgatttaacttca |
15650888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18779289 - 18779435
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatga--gcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttca |
98 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||| | |||||| || |||| |||||||||| ||| ||| || ||||||||||||||||| ||| |
|
|
| T |
18779289 |
caattgcaataagtaaagataaaataacacactttattatggcaaatgtgcaataaaccatataatctgatgtgacatgaattaaatacacaaatgctca |
18779388 |
T |
|
| Q |
99 |
atgattaaccatttaacttcaaaagaaaagtcattcttacgacttca |
145 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| ||| ||||||| |
|
|
| T |
18779389 |
atgattgaccatttaacttcatcaataaagtcatttttatgacttca |
18779435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 18059252 - 18059366
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||| ||||| |||| || ||||||||||||||| |||||||| || |||||||||||||||| |||||| |
|
|
| T |
18059252 |
caattgcaataagtaaagatataataacacacattatggataaatatgcaatacaccatataatctgacatgacatgaattaaatacacaaatattcaat |
18059351 |
T |
|
| Q |
101 |
gattaaccatttaac |
115 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
18059352 |
aattgaccatttaac |
18059366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 18947537 - 18947642
Alignment:
| Q |
50 |
aatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccat |
149 |
Q |
| |
|
||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||| | | ||||||||||| |
|
|
| T |
18947537 |
aatacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcaccat |
18947636 |
T |
|
| Q |
150 |
ataatt |
155 |
Q |
| |
|
| |||| |
|
|
| T |
18947637 |
agaatt |
18947642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19073516 - 19073359
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
||||| |||||||| || ||| ||||||||||||||| ||||| || ||||||||||||||| |||| ||| || ||||||||||||||| ||||| |
|
|
| T |
19073516 |
caatttcaataagtaaatatataatgacacaccttatagacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaat |
19073417 |
T |
|
| Q |
101 |
gattaaccatttaacttca-aaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||||| || |||| ||||||| | ||||||||||| |||||| |
|
|
| T |
19073416 |
gattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaatttt |
19073359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 34441813 - 34441967
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| || |||||| |||||| |||||| || ||||||||||||| ||||| ||| || |||||||||||||||| |||||| |
|
|
| T |
34441813 |
caattgcaataagtaaagatataacgacacatcttatgggcaaatgtgcaatacaccatata--atgacgtgacatgaattaaatacacaaatattcaat |
34441910 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||| |||||||||| | | |||||||||| | | |||||||||||| |||||| |
|
|
| T |
34441911 |
aattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaatttt |
34441967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 39788545 - 39788623
Alignment:
| Q |
79 |
attaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||| |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39788545 |
attaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaatttt |
39788623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 27138926 - 27139056
Alignment:
| Q |
16 |
aagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaac |
115 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| || |||||||| |||||| |||| ||| || ||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
27138926 |
aagatataatgacacactttatgggcaaatatgcaatacaccgtataatctgacgtgacatggattaa-tacacaaatgatcaatgattggccatttaac |
27139024 |
T |
|
| Q |
116 |
ttcaaaagaaaagtcattcttacgacttcacc |
147 |
Q |
| |
|
|||| | |||||||||| | | ||||||||| |
|
|
| T |
27139025 |
ttcatcaaaaaagtcattttcatgacttcacc |
27139056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 42005544 - 42005391
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||| |||| | || ||||||||||||||| ||| ||| || |||||||| |||||| |||||| |
|
|
| T |
42005544 |
caattacaataagtaaagatgtaatgacacaccttatgggcaa-tgtgcaatacaccatataat--gacgtgacatggattaaataaacaaatattcaat |
42005448 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
| || | |||||||||||| | |||| ||||| | | |||||||||||| |||||| |
|
|
| T |
42005447 |
ggttgatcatttaacttcaccaaaaaaatcattttcatgacttcaccatagaatttt |
42005391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 43446348 - 43446508
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| |||||| | ||||| ||| |||||||||| || || |||||||||||| |||| || ||| |||| |||| |||||||||||| |
|
|
| T |
43446348 |
caattgtaataagtaaagatatagtgacataccctatgagcaaacgtgcaacacaccatataatttgacgtggtatgcattagatacgcaaatgttcaat |
43446447 |
T |
|
| Q |
101 |
gattaaccatt----taacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| | |||| |||||||| |||||||||||| | |||||||||||| |||||| |
|
|
| T |
43446448 |
gattgatcattctcataacttcaccgaaaaagtcattctcatgacttcaccatagaatttt |
43446508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41713320 - 41713190
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| | ||| ||||||||| |||||| |||||| ||||| |||||||||| ||||| ||| || ||||||||||| |||| |||||| |
|
|
| T |
41713320 |
caattgtaataagtatacatataatgacacatcttatgggcaaatgtgtaacacaccatata--atgacgtgacatgaattaaatacataaatattcaat |
41713223 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcatt |
133 |
Q |
| |
|
|||| ||||||| |||| |||||| ||||| |
|
|
| T |
41713222 |
gattggtcatttaatttcaccagaaaaatcatt |
41713190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 22963547 - 22963402
Alignment:
| Q |
16 |
aagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccat----t |
111 |
Q |
| |
|
|||||| |||||||||||||| || ||||| |||| ||||||||||||| |||| | || |||||||||||||| | | ||||||| ||| | |
|
|
| T |
22963547 |
aagatataatgacacaccttaagaacaaatatgtagtacaccatataatctgacgttgcattgattaaatacacaaaagctaaatgattggtcataggat |
22963448 |
T |
|
| Q |
112 |
taacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
22963447 |
taactttaccagaaaagtcattcttatgacttcaccataaaatttt |
22963402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 58184 - 58081
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| || ||| || |||||| ||||| ||||| || ||||||||||||||| ||| ||| || ||||||||||| | ||||| ||| |
|
|
| T |
58184 |
caattgcaataagtaaaaatattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaattaaatacagatatgttaaat |
58085 |
T |
|
| Q |
101 |
gatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
58084 |
gatt |
58081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 22955202 - 22955351
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||||||||| || ||||||||||||||| |||| ||| || |||||||||||||||||||||| |
|
|
| T |
22955202 |
caattgcaataagtaaagatacaatgacataccttatgagcaaatgtgcaatacaccatataatttgacgtgacatggattaaatacacaaatgttcaat |
22955301 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccata |
150 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
22955302 |
aattgaccatttaacttcaccagaaaagtcattctcattacttcaccata |
22955351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 23402261 - 23402417
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| || ||| ||||||| | |||||| ||||| | |||||||||||||||||||| ||| || ||||||||||||| ||||||||| |
|
|
| T |
23402261 |
caattgaaataagtaaatatataatgacatatcttatggacaaatgcgcaatacaccatataatatgacgtgacatgaattaaatacacagatgttcaat |
23402360 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| | |||||| ||||| |||||| |
|
|
| T |
23402361 |
gattgaccatttaacttcaccagaaaagtcattctcatgacttcgccatagaatttt |
23402417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37854186 - 37854318
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||| ||| |||||| || ||| ||||||||||||||| || ||||||||||||||| |||| ||| || |||||||||||||||| ||||| |
|
|
| T |
37854186 |
caattgcaatcagtaaagatataa--acataccttatgagcaaatgtgcaatacaccatataatgtgacgtgacatggattaaatacacaaatgctcaat |
37854283 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattct |
135 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||| |
|
|
| T |
37854284 |
aattgaccatttaatttcaccagaaaagtcattct |
37854318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 7743077 - 7742924
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||| ||||| | ||||||||||||||| | || ||| ||| ||||||||||||||| ||||| |
|
|
| T |
7743077 |
caattgcaataagtaaagatataatgacacgccttatggacaaatgtacaatacaccatataatctaacgtgacatagattaaatacacaaatactcaat |
7742978 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataat |
154 |
Q |
| |
|
|||| | ||||| |||||| | |||||||||| ||| ||||||| ||| |||| |
|
|
| T |
7742977 |
gattgatcattttacttcatcaaaaaagtcatttttatgacttcagcatgtaat |
7742924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4618645 - 4618761
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||| | || ||| ||||||||| |||||| ||||| || ||||||||||||||| ||| || || ||||||||||||||||||||||| |
|
|
| T |
4618645 |
caattgcaataaataaatatataatgacacattttatgaacaaatgtgcaatacaccatataatttgaagcgacatgaattaaatacacaaatgttcaat |
4618744 |
T |
|
| Q |
101 |
gattaaccatttaactt |
117 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
4618745 |
gattagtcatttaactt |
4618761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8133449 - 8133596
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| | |||| ||||||| ||||||| |||||| || ||||||||||||||| |||| || | ||||||||||||||||| | ||| |
|
|
| T |
8133449 |
caattgcaataagtaatgatataatgacagaccttataagcaaacgtgcaatacaccatataatctgacgtgtcttgaattaaatacacaaatgcttaat |
8133548 |
T |
|
| Q |
101 |
gattaacca--tttaacttcaaaagaaaagtcattcttacgacttcac |
146 |
Q |
| |
|
|||| | || |||||||||| | |||||| ||||||| |||||||| |
|
|
| T |
8133549 |
gattgatcatttttaacttcaccaaaaaagttattcttatgacttcac |
8133596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19786442 - 19786280
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||| || ||| || ||||||||||||| || || ||||||||||||||||| ||||| |
|
|
| T |
19786442 |
caattgcaataagtaaagatataatgacacaccttacagacaaatgtgcaatgcatcatataatatgacgtggcatgaattaaatacacaaatgctcaat |
19786343 |
T |
|
| Q |
101 |
gattaaccat----ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
| || ||| ||||||| | ||||||||||||||| | ||||||| | || |||||||| |
|
|
| T |
19786342 |
tagtagacatatgattaacttaataagaaaagtcattctcatgacttcatcgtagaatttttc |
19786280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5781674 - 5781560
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||| | |||||| ||||||||| ||||| ||||| || ||||||||||||| ||||| ||| || ||||||||||||||| || ||| |
|
|
| T |
5781674 |
caattgcaataaataaagatataatgacacattttatggtcaaatatgcaatacaccatata--atgacgtgacatggattaaatacacaaatatttaat |
5781577 |
T |
|
| Q |
101 |
gattaaccatttaactt |
117 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
5781576 |
gattgatcatttaactt |
5781560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 49002382 - 49002281
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||| | | |||| || ||||||||||||||| ||| ||| ||| ||||||||||||||| ||||| |
|
|
| T |
49002382 |
caattgcaataagtaaagatataatgacac--cttaagggaaaatgtgcaatacaccatataatctgatatggtatggattaaatacacaaatactcaat |
49002285 |
T |
|
| Q |
101 |
gatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
49002284 |
gatt |
49002281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 25691683 - 25691731
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
25691683 |
ttaacttcacgagaaaagtcattctcatgacttcaccataaaatttttc |
25691731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 49359518 - 49359674
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||||||| || |||||| ||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
49359518 |
caattgcattaagtaaagatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtgtcatggattaaatacacaaatgttcaat |
49359617 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| | | |||||||||||| |||||| |
|
|
| T |
49359618 |
gattggccatttaacttcacaaaaaaagtcattttcatgacttcaccatagaatttt |
49359674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 40640529 - 40640680
Alignment:
| Q |
6 |
gcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgatta |
105 |
Q |
| |
|
||||||||| || ||| ||||||||| |||||| |||||| || |||||||||||||||||||| ||| || |||||||||||||||| ||||||||| |
|
|
| T |
40640529 |
gcaataagtaaaaatataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaatgctcaatgattg |
40640628 |
T |
|
| Q |
106 |
accatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
40640629 |
accatttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt |
40640680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 38392518 - 38392673
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| || ||| |||||||||| ||||| |||||| || |||||| |||||||| || ||||| || |||||||||||||||||||||| |
|
|
| T |
38392518 |
caattgcaataagtaaatatataatgacacacattatgggcaaatgtgcaatacatcatataatctgtcatgacatggattaaatacacaaatgttcaat |
38392617 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataattt |
156 |
Q |
| |
|
|| | |||||||||||||| | |||||||||||| | |||||||||||||||||| |
|
|
| T |
38392618 |
gactgaccatttaacttcaccaaaaaagtcattctcatgacttcaccatataattt |
38392673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 32180641 - 32180793
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| || ||||| || ||||| | |||||| |||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
32180641 |
caattgcaataagtaaagatataatgacacacctta-ga-caaatgtgcaatac--cgtataatctgacgtgacataaattaaatacacaaatgctcaat |
32180736 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | |||||||| || |||||| |
|
|
| T |
32180737 |
gattaaccatttaacttcactagaaaagtcattctcataacttcaccgtacaatttt |
32180793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7568609 - 7568727
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||| ||||| |||||| || ||||| |||||||| |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
7568609 |
caattgtaataagtaaagatataatgacacactttatgtgcaaatgtgcaatactgcatataatctgacgtgacatgaattaaatacacaaatgctcaat |
7568708 |
T |
|
| Q |
101 |
gattaaccatttaacttca |
119 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
7568709 |
gatttaccatttaacttca |
7568727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44880948 - 44880831
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| |||||| |||||||| |||||||||||||| || |||||||||||| || |||| ||| || |||||||||| ||||||||||| |
|
|
| T |
44880948 |
caattgtaataagtaaagatataatgacac-ccttatgagcaaatgtgcaatacaccatattatctgacgtgacatggattaaatacataaatgttcaat |
44880850 |
T |
|
| Q |
101 |
gattaaccatttaacttca |
119 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44880849 |
gattgaccatttaacttca |
44880831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 19606806 - 19606960
Alignment:
| Q |
3 |
attgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatga |
102 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||| |||| | ||||||||||||||| |||| ||| | ||||||||||||||||| ||||| | |
|
|
| T |
19606806 |
attgcaacaagtaaagatataatgacacaccttatggaaaaatgttcaatacaccatataatctgacgtgacctgaattaaatacacaaatgctcaatca |
19606905 |
T |
|
| Q |
103 |
ttaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
19606906 |
ttggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaatttt |
19606960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 18272150 - 18272269
Alignment:
| Q |
37 |
tgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattctt |
136 |
Q |
| |
|
||||||||| || ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| | ||||| ||| |||||||||||||| |
|
|
| T |
18272150 |
tgagcaaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgatt-gggagttaacgtcattagaaaagtcattctc |
18272248 |
T |
|
| Q |
137 |
acgacttcaccatataatttt |
157 |
Q |
| |
|
| ||||||||| ||||||||| |
|
|
| T |
18272249 |
atgacttcaccgtataatttt |
18272269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 53811866 - 53812022
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||||||||| |||| ||| || |||||||||| ||||||||| | |
|
|
| T |
53811866 |
caattgcattaagtaaagatataatgacacaccttatgtacaaatgtggaatacaccatataatctgacgtgacatggattaaatacataaatgttcact |
53811965 |
T |
|
| Q |
101 |
gatta-accatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|| | | || ||||||||| |||||||||||||| | ||||||||| || |||||| |
|
|
| T |
53811966 |
gaccatagca-ttaacttcatcagaaaagtcattctcatgacttcaccgtagaatttt |
53812022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 42204503 - 42204344
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||| |||| || ||||||||||||||| || ||| ||| |||||||||||||||| ||||| |
|
|
| T |
42204503 |
caattgcaataagtaaagatata-tgacacaccttatgagtaaatatgcaatacaccatataatccgatgtgacatagattaaatacacaaatgctcaat |
42204405 |
T |
|
| Q |
101 |
gattaaccat----ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|| ||| ||||||||| |||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
42204404 |
aataggtcatatggttaacttcatcagaaaagtcattctcacgacttcacgatagaatttt |
42204344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 45879428 - 45879544
Alignment:
| Q |
41 |
caaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacga |
140 |
Q |
| |
|
||||| || ||||||||||||||| |||| || || |||||||||||||||| ||||||||| ||||||||||| | |||||||||||||| | || |
|
|
| T |
45879428 |
caaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatga |
45879527 |
T |
|
| Q |
141 |
cttcaccatataatttt |
157 |
Q |
| |
|
||||| |||| |||||| |
|
|
| T |
45879528 |
cttcagcatagaatttt |
45879544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 5124802 - 5124727
Alignment:
| Q |
29 |
acaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgatt |
104 |
Q |
| |
|
||||| |||||| |||| || |||||||| |||||| |||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5124802 |
acaccgtatgagtaaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgatt |
5124727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 4556702 - 4556543
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatga----tataaattaaatacacaaatgttc |
97 |
Q |
| |
|
||||| ||||||| |||||| |||||||||| |||||||||||| || ||||| ||||||||| |||| ||| || |||||||||||||||| || |
|
|
| T |
4556702 |
aattgtaataagtaaagatataatgacacacattatgagcaaatgtgcaatacgccatataatctgacgtgacatgaattaattaaatacacaaatactc |
4556603 |
T |
|
| Q |
98 |
aatgattaaccat-ttaacttcaaaagaaaagtcattcttacgacttcaccatataattt |
156 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| | | |||||||||||| ||||| |
|
|
| T |
4556602 |
aatgattggtcatagtaacttcacgagaaaagtcattttcatgacttcaccatagaattt |
4556543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 54606837 - 54606761
Alignment:
| Q |
28 |
cacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgatt |
104 |
Q |
| |
|
|||||| |||||| |||| || |||||||| ||| || |||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
54606837 |
cacaccgtatgagtaaatgtgcaatacaccgtatgatttgacatgacatacattaaatacacaaatgttcaatgatt |
54606761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 47930634 - 47930712
Alignment:
| Q |
79 |
attaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||| ||||| | | |||||||||||| |||||| |
|
|
| T |
47930634 |
attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaatttt |
47930712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7758313 - 7758372
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccata |
60 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||| |||||| | ||||||||||| |
|
|
| T |
7758313 |
caattgcaataagtaaagatataatgacgcaccttatgggcaaatgtacaatacaccata |
7758372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 19631905 - 19631751
Alignment:
| Q |
3 |
attgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatga |
102 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||| |||||| || ||||||||||||||| | || ||| || |||||||||||||||||||||||| |
|
|
| T |
19631905 |
attgcaataagtaaagatataatgaaacaccttataggcaaatgtgcaatacaccatataatctaacgtgacatggattaaatacacaaatgttcaatga |
19631806 |
T |
|
| Q |
103 |
ttaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19631805 |
ttggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaatttt |
19631751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11084044 - 11084198
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||||| ||||| ||| || |||||||||| |||| |||||| |
|
|
| T |
11084044 |
caattgcaataagtaaagatataatgacacaccttatgggcaaatgtgtaatacaccatata--atgacgtgacatggattaaatacataaatattcaat |
11084141 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||| | |||||||| ||| | | |||||||||||| |||||| |
|
|
| T |
11084142 |
gattggtcatttaactttaccagaaaagttattttcatgacttcaccatagaatttt |
11084198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26301815 - 26301969
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| |||||| |||| || |||||| |||||||| ||| ||| || ||||||||||| |||| |||||| |
|
|
| T |
26301815 |
caattgcaataagtaaagatataatgacacatcttatggataaatatgcaatacatcatataat--gacgtgacatgaattaaatacataaatattcaat |
26301912 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||||| | |||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
26301913 |
gattggtcatttaacttcacgaaaaaaatcatttttatgacttcaccatataatttt |
26301969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 4102865 - 4102934
Alignment:
| Q |
50 |
aatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttca |
119 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4102865 |
aatacaccatataatatgatgtggcatagattaaatacacaaatgttcaatgattagacatttaacttca |
4102934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 30338556 - 30338476
Alignment:
| Q |
79 |
attaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
||||||| || ||||| ||||||||||| |||||||||||| | |||||||||||| || |||||| |||| |||||||| |
|
|
| T |
30338556 |
attaaatgcataaatgctcaatgattaatcatttaacttcactaaaaaagtcattctcacaacttcatcatagaatttttc |
30338476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 6614034 - 6614084
Alignment:
| Q |
109 |
atttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
||||||||||| |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
6614034 |
atttaacttcaccagaaaagtcattcttatgatttcaccatataatttttc |
6614084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30341182 - 30341124
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccat |
59 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |||||| | |||||||||| |
|
|
| T |
30341182 |
caattgcaataagtgaagatataatgacacaacttatgggcaaatgtacaatacaccat |
30341124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 30353494 - 30353542
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
30353494 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttttc |
30353542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 2266749 - 2266904
Alignment:
| Q |
4 |
ttgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgat |
103 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||| |||| | || || || |||||||||||||||| |||||||| |
|
|
| T |
2266749 |
ttgcaataagtaaagatataatgacacaccttatagacaaatgtgtaatacaccatgtaatctaacgtggcatggattaaatacacaaatgctcaatgat |
2266848 |
T |
|
| Q |
104 |
taaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
| || ||||||||||| |||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
2266849 |
tgacgatttaacttcactagaaaagtcattatcatgacttcaccatataatttttc |
2266904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 1012453 - 1012339
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatg |
101 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| |||||| || ||||||||||||||| |||| ||| || ||||||||||||||| || ||| |
|
|
| T |
1012453 |
aattgcaataagtaaagatataatgacacaccttatgggcaaatgtgcaatacaccatataatctgacgtgacatggattaaatacacaaatactcgatg |
1012354 |
T |
|
| Q |
102 |
attaaccatttaact |
116 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1012353 |
attaaccatttaact |
1012339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 17612491 - 17612338
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatg |
101 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||||| || |||||| ||| |||| || | ||| || |||||| |||||||||| | |||| |
|
|
| T |
17612491 |
aattgcaataagtaaagatgcaatgacacaccttattggcaaatgtgaaatacatcatttaatctggcgtgacatgaattaa-tacacaaatgcttaatg |
17612393 |
T |
|
| Q |
102 |
attaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataattt |
156 |
Q |
| |
|
||| |||||||||||||| | |||| ||||||| | |||||||||||| ||||| |
|
|
| T |
17612392 |
attgaccatttaacttcattaaaaaaatcattctcatgacttcaccatagaattt |
17612338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 2704640 - 2704514
Alignment:
| Q |
29 |
acaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaag |
128 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||| ||| ||| | |||||||||||||||| |||||||||| | |||||||||||| ||||||| |
|
|
| T |
2704640 |
acaccttacgggcaaatgtgcaatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaag |
2704543 |
T |
|
| Q |
129 |
tcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||||| | | |||||||||||| |||||| |
|
|
| T |
2704542 |
tcattttcatgacttcaccataaaatttt |
2704514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 54995689 - 54995821
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| || ||||||| ||||| ||||| || |||||| ||||||| |||||||| || ||||||||| ||||||| |||| |
|
|
| T |
54995689 |
caattgcaataagtaaagatataaagacacacattatggacaaatgtgcaatacatcatataacctgacatgacatggattaaatacgcaaatgtacaat |
54995788 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcatt |
133 |
Q |
| |
|
|||| ||||||||||||| | |||||||||| |
|
|
| T |
54995789 |
gattggccatttaacttcaccaaaaaagtcatt |
54995821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 51204726 - 51204581
Alignment:
| Q |
16 |
aagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccat----t |
111 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| || ||| ||||||||||| ||| ||| || |||||||||||||| | ||||| ||| | ||| | |
|
|
| T |
51204726 |
aagatataatgacacaccttattagcaaatgtgcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattgatcatagggt |
51204627 |
T |
|
| Q |
112 |
taacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
51204626 |
taacttcaccagaaaagtcatttttatgacttcaccatagaatttt |
51204581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 9743745 - 9743614
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatg |
101 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| ||||| |||| || |||||||||||||||||||| | | || |||||||||||||||||||||| |
|
|
| T |
9743745 |
aattgcaataagtaaagatttaatgaaacactttatggaaaaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatgttcaata |
9743646 |
T |
|
| Q |
102 |
attaaccatttaacttcaaaagaaaagtcatt |
133 |
Q |
| |
|
||| ||||||| |||| | |||||||||| |
|
|
| T |
9743645 |
attggtcatttaatttcaccaaaaaagtcatt |
9743614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 51959990 - 51959922
Alignment:
| Q |
18 |
gataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaata |
86 |
Q |
| |
|
|||| |||||||||| ||||| |||||| || ||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
51959990 |
gatataatgacacactttatgggcaaatgtgcaatacaccatataatctgacgtgatatagattaaata |
51959922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33036092 - 33036155
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataat |
64 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||| |||||| || ||||||| ||||||| |
|
|
| T |
33036092 |
caattgcaataagtaaagatataatgacaaaccttataggcaaatgtgcaatacacaatataat |
33036155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 22729866 - 22729777
Alignment:
| Q |
4 |
ttgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaat |
93 |
Q |
| |
|
||||||||||| |||||| | || |||||| ||||||||||| || |||||||| |||||| ||| || || ||||||||||||||| |
|
|
| T |
22729866 |
ttgcaataagttaagatatagtggcacaccatatgagcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaat |
22729777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 33255570 - 33255497
Alignment:
| Q |
88 |
acaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttcat |
161 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||| | |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
33255570 |
acaaatgctcaataattggccatttaacttcaccaaaaaagtgattctcgtgacttcaccatataatttttcat |
33255497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 27396664 - 27396616
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
27396664 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttttc |
27396616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 16127678 - 16127546
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||| |||| || |||||| |||||||| |||| || || |||||||||||||||| ||||| |
|
|
| T |
16127678 |
caattgcaataagtaaacatataatgacacaccttatgagtaaatgtgcaatacatcatataatctgacgtgtcatggattaaatacacaaatgatcaat |
16127579 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcatt |
133 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |
|
|
| T |
16127578 |
gattgaccatttaacttcaccagaaaagtcatt |
16127546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13876809 - 13876965
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||| | || ||| |||||||||| ||||| |||||| ||||||||||||||| ||||||| || || ||||||||||||||| ||||| |
|
|
| T |
13876809 |
caattgcaataactaaaaatataatgacacactttatgggcaaatgtgtaatacaccatatgatatgacgtggcattgattaaatacacaaatactcaat |
13876908 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| | |||||||||||| | |||||||||| | | ||||||||||| |||||| |
|
|
| T |
13876909 |
gattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaatttt |
13876965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27118488 - 27118372
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| ||||| || |||||| ||||||||||||| || || |||||||||| ||||| || || |
|
|
| T |
27118488 |
caattgcaataagtaaagatataatgacacaccttatgaacaaatgtgcaatacatcatataatatgacgtggcatggattaaatacataaatgctccat |
27118389 |
T |
|
| Q |
101 |
gattaaccatttaactt |
117 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
27118388 |
gattaactatttaactt |
27118372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 16132633 - 16132477
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||| |||||| || |||||||| |||||| | || | || |||||||||||||||| ||||| |
|
|
| T |
16132633 |
caattgcaataagtaaagatataatgacacacattatgtgcaaatgtgcaatacaccgtataatctcacgttgcatggattaaatacacaaatgctcaat |
16132534 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||| ||||||||||||| | |||||||| ||| |||||||||||| |||||| |
|
|
| T |
16132533 |
aatttgccatttaacttcaccaaaaaagtcaatctattgacttcaccatagaatttt |
16132477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10758190 - 10758308
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| || ||| |||||||||| ||| |||||| | ||||||||||||||| ||| || || ||||||||||||||||| ||||| |
|
|
| T |
10758190 |
caattgcaataagtaaaaatataatgacacacactataggcaaatgttcaatacaccatataatctgatgtggcatgaattaaatacacaaatgctcaat |
10758289 |
T |
|
| Q |
101 |
gattaaccatttaacttca |
119 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
10758290 |
gattgaccatttaacttca |
10758308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 421551 - 421448
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||| | ||| || |||| || |||| || |||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
421551 |
caattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaat |
421452 |
T |
|
| Q |
101 |
gatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
421451 |
gatt |
421448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 15964236 - 15964155
Alignment:
| Q |
23 |
aatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgatt |
104 |
Q |
| |
|
||||||||| |||||| ||||| || ||||||| ||||||| |||| ||| ||| |||||||||||||||| | ||||||| |
|
|
| T |
15964236 |
aatgacacatcttatggacaaatgtgcaatacactatataatttgacgtgacatagattaaatacacaaatgcttaatgatt |
15964155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 32267078 - 32267032
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||| |||||| |
|
|
| T |
32267078 |
ttaacttcacaaaaaaagtcattcttatgacttcaccataaaatttt |
32267032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 17695931 - 17696012
Alignment:
| Q |
29 |
acaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccat |
110 |
Q |
| |
|
||||||||||| ||||| | ||| |||||||| || |||| || ||| ||||||||||| |||| |||||||||| ||||| |
|
|
| T |
17695931 |
acaccttatgaacaaatatacaatgcaccatatgatctgacgtggtatgaattaaatacataaatattcaatgattgaccat |
17696012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 28769697 - 28769645
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttcatgt |
163 |
Q |
| |
|
||||||||| || |||||| ||| ||| |||||||||||| |||||||||||| |
|
|
| T |
28769697 |
ttaacttcacaaaaaaagttatttttatgacttcaccatagaatttttcatgt |
28769645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 43579292 - 43579244
Alignment:
| Q |
109 |
atttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
43579292 |
atttaacttcactagaaaagtcattctcatgacttcaccatagaatttt |
43579244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 4108804 - 4108958
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||| |||||| || ||||||||||||| ||||| || || |||||||||||||||| |||||| |
|
|
| T |
4108804 |
caattgcaataagtaaagatataacgacacaccttatgggcaaatgtgcaatacaccatata--atgacgtggcattaattaaatacacaaatattcaat |
4108901 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||| | | |||||||||| | | |||||||||||| |||||| |
|
|
| T |
4108902 |
gattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaatttt |
4108958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3038564 - 3038462
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| || || || ||||||| |||||| |||| ||| |||||||||||| ||||||| ||||| |
|
|
| T |
3038564 |
caattgcaataagtaaagatataatgacacaccttatggacagatgtgcaatacactgtataatctgacgtgacataaattaaatagacaaatgctcaat |
3038465 |
T |
|
| Q |
101 |
gat |
103 |
Q |
| |
|
||| |
|
|
| T |
3038464 |
gat |
3038462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7290877 - 7290722
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||||||| |||||| ||| | ||| |||||| | |||| | |||||| ||||||||| |||| ||| || ||||||| |||||||| ||||| |
|
|
| T |
7290877 |
caattgcaataagtaaagatataataatacatcttatgggaaaatgtctaatacgccatataatctgacgtgacatgaattaaacgcacaaatgatcaat |
7290778 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattcttacgacttcaccatataatttt |
157 |
Q |
| |
|
|||| |||||||||| ||| |||||| ||||| | |||||||||||| |||||| |
|
|
| T |
7290777 |
gattcaccatttaacgtcaccagaaaa-tcatttgcatgacttcaccatagaatttt |
7290722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35735870 - 35736032
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| |||| || |||||| | || |||||||||||||||||| || ||||||||||||||| | || || | | |||||||||||||||| ||||| |
|
|
| T |
35735870 |
caattgtaataggtaaagatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacgggacacacattaaatacacaaatgctcaat |
35735969 |
T |
|
| Q |
101 |
gattaaccat----ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttc |
159 |
Q |
| |
|
|||| | | ||||||||| | |||||||||||| | |||||||||||| |||||||| |
|
|
| T |
35735970 |
gattcgtcgtatgattaacttcaccaaaaaagtcattctaatgacttcaccatagaatttttc |
35736032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 23176689 - 23176813
Alignment:
| Q |
35 |
tatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttcaaaagaaaagtcattc |
134 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||| ||| || ||||| ||||||||| |||||||||| |||||||||||| | |||||||||| |
|
|
| T |
23176689 |
tatgggcagatttgcaatacaccatataat--gacgtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattt |
23176786 |
T |
|
| Q |
135 |
ttacgacttcaccatataatttttcat |
161 |
Q |
| |
|
| | |||||||||||| || ||||||| |
|
|
| T |
23176787 |
tcatgacttcaccatagaaattttcat |
23176813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 7891091 - 7891141
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttcat |
161 |
Q |
| |
|
||||||||| || |||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
7891091 |
ttaacttcacaaaaaaagtcattctcatgacttcaccatagaatttttcat |
7891141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34463574 - 34463472
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||| |||| |||| || ||||||| ||||||| ||| || ||| |||||||||| |||| |||||| |
|
|
| T |
34463574 |
caattacaataagtaaagatataatgacacaccatatgttcaaacgtgcaatacacaatataatgtgaagtggtatggattaaatacataaattttcaat |
34463475 |
T |
|
| Q |
101 |
gat |
103 |
Q |
| |
|
||| |
|
|
| T |
34463474 |
gat |
34463472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18756557 - 18756625
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgac |
69 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||| ||||| || |||| |||||||||| |||| |
|
|
| T |
18756557 |
caattgcaataagtaaagatataatgacacatcttatagacaaatgtgcaatagaccatataatttgac |
18756625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 24707 - 24841
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||| ||||||| || ||| ||| ||| |||||||| |||||| | ||||||||||||||| |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
24707 |
caattggaataagtaaatatataataacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaat |
24806 |
T |
|
| Q |
101 |
gattaaccatttaacttcaaaagaaaagtcattct |
135 |
Q |
| |
|
|||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
24807 |
gattgaccatttaatttcaccagaaaaatcattct |
24841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 5747 - 5644
Alignment:
| Q |
2 |
aattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaatg |
101 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||| |||||| || ||||||||||||||| | |||||| || ||||||||||||||||| |||||| |
|
|
| T |
5747 |
aattgcaataaggaaatatataatgacacaccttataggcaaatgtgcaatacaccatataatctaacatgacatgaattaaatacacaaatgctcaatg |
5648 |
T |
|
| Q |
102 |
atta |
105 |
Q |
| |
|
|||| |
|
|
| T |
5647 |
atta |
5644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9021 - 9124
Alignment:
| Q |
1 |
caattgcaataagtgaagataaaatgacacaccttatgagcaaatttgtaatacaccatataatatgacatgatataaattaaatacacaaatgttcaat |
100 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||| | ||| || |||| || |||| || |||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
9021 |
caattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgacatacattaaatacacaaatgttcaat |
9120 |
T |
|
| Q |
101 |
gatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
9121 |
gatt |
9124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 44005 - 43956
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttca |
160 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
44005 |
ttaacttcaccaaaaaagtctttcttacgacttcaccatagaatttttca |
43956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 154782 - 154831
Alignment:
| Q |
111 |
ttaacttcaaaagaaaagtcattcttacgacttcaccatataatttttca |
160 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
154782 |
ttaacttcaccaaaaaagtctttcttacgacttcaccatagaatttttca |
154831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University