View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_205 (Length: 251)
Name: NF1139_low_205
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_205 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11399042 - 11399281
Alignment:
| Q |
1 |
tgcaacgcttctcaccatcaaaaactgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagta |
100 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11399042 |
tgcaaagcttctcacgataaaaaactgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagta |
11399141 |
T |
|
| Q |
101 |
gttgcttgttttacaagttagttacatatgcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcatttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11399142 |
gttgcttgttttacaagttagttacatatgcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcatttgtat |
11399241 |
T |
|
| Q |
201 |
ctatctcttttctctctcaatttctctataaatcattcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11399242 |
ctatctcttttctctctcaatttctctataaatcattcat |
11399281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 36612695 - 36612830
Alignment:
| Q |
26 |
tgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagtagttgcttgttttacaagttagttac |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
36612695 |
tgttgtattttaatttaagttagttaaaacagttaggtttgttgtcaactgttttagaagttggttag-agagcggttgcttgctttac-agttagttac |
36612792 |
T |
|
| Q |
126 |
atatgcttagtataaattattgtaatgttcacttttca |
163 |
Q |
| |
|
| |||||| |||||||| ||| || ||||||||||||| |
|
|
| T |
36612793 |
acatgcttggtataaatgattatagtgttcacttttca |
36612830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 36614006 - 36614047
Alignment:
| Q |
176 |
aatatagaattacaatcatttgtatctatctcttttctctct |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
36614006 |
aatatagaattacaatccattgcatctatctcttttctctct |
36614047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 30915288 - 30915356
Alignment:
| Q |
159 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||||||||| |
|
|
| T |
30915288 |
tttcattcactaatgagaatatagaattacaatctattgcatatatctcttatctctctcaatttctct |
30915356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 30904475 - 30904543
Alignment:
| Q |
159 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
227 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||| || |||||||| ||||||||||||||||| |
|
|
| T |
30904475 |
tttcattcattaatgagaatatagaattacaatctattgcatatatctcttctctctctcaatttctct |
30904543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 43695266 - 43695224
Alignment:
| Q |
26 |
tgttgtattttaattcaagttagttaaaacagttagatttgtt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43695266 |
tgttgtattttaattcaagttagttaaaacagttaggtttgtt |
43695224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 8156201 - 8156277
Alignment:
| Q |
159 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctataaatcatt |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || ||||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
8156201 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttt--tctctcaatttctccctaaatcatt |
8156277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University