View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_low_208 (Length: 251)
Name: NF1139_low_208
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_208 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 8403738 - 8403648
Alignment:
| Q |
100 |
gtttatcgcctcacaatgaacattcgattttaggctttcattttttggtaaataaattaaagtatttgctggttcaaaaacgtattttatt |
190 |
Q |
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| T |
8403738 |
gtttattgcctcacaatgaacattcgattttaggctttcattttttggtaaataaatcaaagtatttgctggttcaaaaacgtattttatt |
8403648 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 8418143 - 8418098
Alignment:
| Q |
158 |
aaagtatttgctggttcaaaaacgtattttattcaggtaattctca |
203 |
Q |
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| T |
8418143 |
aaagtatttgttggttcaaaaacttattatattcatgtaattctca |
8418098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 3055 - 3103
Alignment:
| Q |
159 |
aagtatttgctggttcaaaaacgtattttattcaggtaattctcataag |
207 |
Q |
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| T |
3055 |
aagtatttgttggttcaaaaacgtaatttattcgggtaattctcataag |
3103 |
T |
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