View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_209 (Length: 251)
Name: NF1139_low_209
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_209 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 829350 - 829128
Alignment:
| Q |
29 |
acaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgttctagcgtagtagaatttgag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829350 |
acaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgttctagcgtagtagaatttgag |
829251 |
T |
|
| Q |
129 |
caaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatnnnnnnnnnnnnnnnnncaagccttatccaactaagtggg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
829250 |
caaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatacaacaacaacaacaaccaagccttatccaactaagtggg |
829151 |
T |
|
| Q |
229 |
attcctctataccaaaagattaa |
251 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
829150 |
attcctctataccaaaagattaa |
829128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 21202239 - 21202297
Alignment:
| Q |
110 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
168 |
Q |
| |
|
|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
|
|
| T |
21202239 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
21202297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 42201063 - 42201121
Alignment:
| Q |
110 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
168 |
Q |
| |
|
|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
|
|
| T |
42201063 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
42201121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 37985029 - 37985061
Alignment:
| Q |
113 |
cgtagtagaatttgagcaaactactatttctac |
145 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
37985029 |
cgtagtagaatttgagcaaactgctatttctac |
37985061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University