View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_21 (Length: 537)
Name: NF1139_low_21
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_21 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 41 - 528
Target Start/End: Complemental strand, 43441025 - 43440518
Alignment:
| Q |
41 |
atctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcgtcttgttactaacta--------------------taaacc |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
43441025 |
atctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcttcttgttactagctaaaaccgtaagaactaagctataaacc |
43440926 |
T |
|
| Q |
121 |
gaagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaacataaacaacag |
220 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43440925 |
gaagaactttacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgatttaaaacataaacaacag |
43440826 |
T |
|
| Q |
221 |
tttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgggttttga |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43440825 |
tttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttga |
43440726 |
T |
|
| Q |
321 |
agaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagagaagtgagtaacc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43440725 |
agaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgattcaaaagagggattgaaaaagtgaaagaagagaagtgagtaacc |
43440626 |
T |
|
| Q |
421 |
tggttcggagtagcgagtgattttgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgttaaagcttggagggatttgttgt |
520 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43440625 |
tgattcggagtagagagtgattttgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgtaaaagcttggagggatttgttgt |
43440526 |
T |
|
| Q |
521 |
tcctatgc |
528 |
Q |
| |
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|||||||| |
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| T |
43440525 |
tcctatgc |
43440518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 33 - 437
Target Start/End: Complemental strand, 43435166 - 43434742
Alignment:
| Q |
33 |
gtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcgtcttgttactaacta------------------ |
114 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| |
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| T |
43435166 |
gtctcttcatctaaataaaaccctttttccttcatagccctaagaacaatccaaaactctttcatctccttattactagctaaaaccctaagaaccaagc |
43435067 |
T |
|
| Q |
115 |
--taaaccgaagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaacata |
212 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43435066 |
tataaaccgaagaacttgccataaaccactctttctcactgacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgcttcaaaacata |
43434967 |
T |
|
| Q |
213 |
aacaacagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttg |
312 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||| |
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| T |
43434966 |
aacaacagtttcatgagtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcattggtaaaaacacgctccaaaatcatgttg |
43434867 |
T |
|
| Q |
313 |
ggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagagaagt |
412 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| || | ||| | || | ||||||||||||| |||||| | | ||||||| |||| |
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| T |
43434866 |
ggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttggatcggttcaaaagagggagtgaaaaagaggaagaagaaaagt |
43434767 |
T |
|
| Q |
413 |
gagtaacctggttcggagtagcgag |
437 |
Q |
| |
|
||| |||||||||| |||| ||||| |
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| T |
43434766 |
gagaaacctggttccgagttgcgag |
43434742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 29 - 424
Target Start/End: Complemental strand, 43426665 - 43426250
Alignment:
| Q |
29 |
atgtgtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcgtcttgttactaac---------------- |
112 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||| |||| || ||| | |
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| T |
43426665 |
atgtgtctcttcatctaaataaaacccattttccttcatagccttaagaacaatccaaaactctttcatattcttattcctagctaaaatcctgagaacc |
43426566 |
T |
|
| Q |
113 |
----tataaaccgaagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaa |
208 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||| |||| |
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| T |
43426565 |
aagctataagccgaagaactagccataaaccactctttctcactgacccaattgaaaaaggtgaaaactttaagagggttattatccaatcgcttcaaaa |
43426466 |
T |
|
| Q |
209 |
cataaacaacagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
43426465 |
cataaacaacagtttcatgggtcaatgattcacgacattcttcaaattctttctctaactcttcagaccaatcattggtgtaaacacgctctaaaattga |
43426366 |
T |
|
| Q |
309 |
gttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagag |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||| | |||| || ||||||| ||||||| | ||| | |||||| | | ||||||| |
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|
| T |
43426365 |
gttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtgaacgattcaacataggaagtgaaaaggaggaagaagaa |
43426266 |
T |
|
| Q |
409 |
aagtgagtaacctggt |
424 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
43426265 |
aaatgagaaacctggt |
43426250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 508
Target Start/End: Complemental strand, 43426209 - 43426145
Alignment:
| Q |
444 |
tgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgttaaagcttgga |
508 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||| ||||| |
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| T |
43426209 |
tgatgatttgaggaatttgagggaagtggttattgctttcatgcgattcatcgtaaaagtttgga |
43426145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 43434723 - 43434665
Alignment:
| Q |
444 |
tgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgttaaag |
502 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||||| |||||||||||| |||| |
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|
| T |
43434723 |
tgatgatttgaggtatctgagggacgaggttattgctttcatgcgattcatcgtaaaag |
43434665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 43421975 - 43421863
Alignment:
| Q |
121 |
gaagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaacataaacaacag |
220 |
Q |
| |
|
||||||||| || |||||||| ||||| ||| ||||||||||||||| | || |||| | ||||| ||||||||| | || |||| |||||||| | |
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|
| T |
43421975 |
gaagaacttggcaaaaaccaatttttcttactgacccaattgaaaaagcaagaagcttttaatgggtcattatccaattgtttcaaaatgtaaacaacgg |
43421876 |
T |
|
| Q |
221 |
tttcatgggtcaa |
233 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43421875 |
tttcatgggtcaa |
43421863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 41930612 - 41930402
Alignment:
| Q |
122 |
aagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaacataaacaacagt |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
41930612 |
aagaacttaacataaaccaatctttatcactaacccaattgataaaggtaaaaactttaattaggtttttatccaatcactttaaaacataaacaacagt |
41930513 |
T |
|
| Q |
222 |
tt--------catgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgg |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41930512 |
ttgccagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgg |
41930413 |
T |
|
| Q |
314 |
gttttgaagaa |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
41930412 |
gttttgaagaa |
41930402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 28 - 426
Target Start/End: Complemental strand, 20654 - 20251
Alignment:
| Q |
28 |
catgtgtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcgtcttgttacta----------------- |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
20654 |
catgtgtctcttcatctaaatagaaccctttttctttcatagccctaagaacaatccaaaactctttcatactcttattactagctagaaccctaagaac |
20555 |
T |
|
| Q |
111 |
--actataaaccgaagaacttaacataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
20554 |
caactataaaccgaagaactagccataaaccactctttctcactgacccagttgaaaaaggtaaaaactttaagtgggtttttatccaatcgcttcaaaa |
20455 |
T |
|
| Q |
209 |
cataaacaacagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcat |
308 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
20454 |
cataaacaagagtttcatgggtcaatgattcacgacatgcttccaa--------------cttgagaccaatcattggtaaaaacacgctctaaaatcat |
20369 |
T |
|
| Q |
309 |
gttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagag |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| || | ||| | || ||||| ||||||||| |||||| | | ||||||| |
|
|
| T |
20368 |
gttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttggatcgattccaaagagggagtgaaaaagaggaagaagaa |
20269 |
T |
|
| Q |
409 |
aagtgagtaacctggttc |
426 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
20268 |
aagtgagaaacctggttc |
20251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 40186762 - 40186860
Alignment:
| Q |
133 |
ataaaccaatctttctcactaacccaattgaaaaaggtaaaaactttaattgggtttttatccaatcgctttaaaa-cataaacaacagtttcatgggt |
230 |
Q |
| |
|
|||||||| | ||||| | | ||||| |||||||| | |||||||||| ||| || | |||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
40186762 |
ataaaccattgtttctgagtgacccagttgaaaaaagaaaaaactttatgtggtttatgatccaatcgcttcaaaaacgtaaacaacagtttcatgggt |
40186860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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