View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_low_210 (Length: 251)
Name: NF1139_low_210
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_low_210 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 28931878 - 28932117
Alignment:
| Q |
12 |
acagacaatttgatggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28931878 |
acagacaatttgatggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgt |
28931977 |
T |
|
| Q |
112 |
aattaaattttatttgtannnnnnnnctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtag |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28931978 |
aattaaattttatttgtattttttttctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtag |
28932077 |
T |
|
| Q |
212 |
aaaagtcttcttacatgaacttttattgacgacctatttt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28932078 |
aaaagtcttcttacatgaacttttattgacgacctatttt |
28932117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 10186728 - 10186783
Alignment:
| Q |
12 |
acagacaatttgatggcatgtggaaagaagctgaagatgcggcaaagaaggtataa |
67 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10186728 |
acagacaatttgacagtgtgtggaaagaagctgaagctgctgcaaagaaggtataa |
10186783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 35122266 - 35122173
Alignment:
| Q |
17 |
caatttgatggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaatt |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
35122266 |
caatttgatggcgtgtggaaagaagctgaagctgctgcaaagaaggtatagtaaa-----aatcaaatcaaaggttatcatcactcaaaattggtaatt |
35122173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 35122146 - 35122082
Alignment:
| Q |
138 |
ctgaagcactgtagtcttgttggaaaattg---gataaacaagtttgaggtatacataaagcaca |
199 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||||||| |||||||||||| | |||||||| |
|
|
| T |
35122146 |
ctgaagcactgtagtcttgatgggaaattgctagataaacatgtttgaggtataaacaaagcaca |
35122082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University